geneontology / go-announcements

Announcements related to ontology changes that may impact groups using GO, such as obsoletions, merges, etc.
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Obsoletion notice: RNA polyadenylation & related children #602

Closed ValWood closed 9 months ago

ValWood commented 1 year ago

Dear all,

The proposal has been made to obsolete GO:0043631 RNA polyadenylation GO:0006378 mRNA polyadenylation GO:1900364 negative regulation of mRNA polyadenylation GO:1900365 positive regulation of mRNA polyadenylation GO:1900363 regulation of mRNA polyadenylation GO:0043629 ncRNA polyadenylation

Annotations: EXP annotations to these terms have already been removed or reannotated here: https://github.com/geneontology/go-annotation/issues/4553

There is 1 InterPro mapping to mRNA polyadenylation GO:0006378 should be replaced by GO:0043633 polyadenylation-dependent RNA catabolic process

These terms are not present in any subset.

These terms are replaced by terms describing the molecular pathways they are involved in, e.g GO:0180010 co-transcriptional mRNA 3'-end processing, cleavage and polyadenylation pathway (nuclear pathways) GO:0043633 polyadenylation-dependent RNA catabolic process (prokaryotic pathways)

Any comments can be added to the issue: https://github.com/geneontology/go-ontology/issues/24924. Unless objections are received by 07/10/23, we will assume that you agree to this change.

Thanks,

The GO-Ontology Editors

ValWood commented 1 year ago

This is a retrospective obsoletion notice, I omitted to send one out with the original reannotation ticket)