geneontology / go-announcements

Announcements related to ontology changes that may impact groups using GO, such as obsoletions, merges, etc.
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Obsoletion notice: GO:0035584 calcium-mediated signaling using intracellular calcium source and GO:0035585 calcium-mediated signaling using extracellular calcium source #712

Closed edwong57 closed 2 months ago

edwong57 commented 3 months ago

Dear all,

The proposal has been made to obsolete: GO:0035584 calcium-mediated signaling using intracellular calcium source GO:0035585 calcium-mediated signaling using extracellular calcium source

The reason for obsoletion is that these pathways are not clearly defined and likely overlap with transport.

Annotations: There are 35 experimental annotations to this term by:

Group Number of annotations MGI 1 ZFIN 1 PomBase 2 ARUK-UCL 14 UniProt 16

Annotations can be viewed here: https://github.com/geneontology/go-annotation/issues/5132.

Consider:

GO:1990034 calcium ion export across plasma membrane Or, if the intention is to annotate a signaling pathway, choose the appropriate child of GO:0007165 signal transduction

Any comments can be added to the issue: https://github.com/geneontology/go-ontology/issues/27412.

Unless objections are received by 4/3, we will assume that you agree to this change.

Thanks,

The GO-Ontology Editors