Here are the latest terms obsoleted for the GO-EC-RHEA alignment:
GO:0009979 16:0 monogalactosyldiacylglycerol desaturase activity (0 annotations); replace by GO:0102843
name: palmitoyl-[glycerolipid] 7-desaturase activity. These two terms represent the same activity. See https://github.com/geneontology/go-ontology/issues/28363
GO:0052637 delta 3-trans-hexadecenoic acid phosphatidylglycerol desaturase activity (1 EXP annotation by TAIR); replace by GO:0102654 palmitoyl-[glycerolipid] 3-(E)-desaturase activity. These two terms represent the same activity. See https://github.com/geneontology/go-ontology/issues/28362
GO:0072374 carotene epsilon hydroxylase activity (0 annotations) and GO:0072373 alpha-carotene epsilon hydroxylase activity (0 annotations): replace by GO:0072374 carotene epsilon hydroxylase. See https://github.com/geneontology/go-ontology/issues/28362
GO:0052705 methylhistidine N-methyltransferase activity (0 annotations) and GO:0030745
dimethylhistidine N-methyltransferase activity (0 EXP annotations): merge into GO:0052706 L-histidine N(alpha)-methyltransferase activity. These represent substeps of the overall reaction GO:0052706. See https://github.com/geneontology/go-ontology/issues/28375
GO:0052707 (7 annotations, 2 EXP by PomBase and UniProt) N-alpha,N-alpha,N-alpha-trimethyl-L-histidine biosynthesis from histidine: merge into GO:0052704 ergothioneine biosynthesis from histidine via gamma-glutamyl-hercynylcysteine sulfoxide See https://github.com/geneontology/go-ontology/issues/28375
GO:0036136 kynurenine-oxaloacetate transaminase activity: there is no evidence that this reaction exists. No annotations
GO:0004727 prenylated protein tyrosine phosphatase activity: reaction corresponds to the more general GO:0004725 protein tyrosine phosphatase activity - 3 EXP, will be automatically re-annotated
GO:0030945 protein tyrosine phosphatase activity, via thiol-phosphate intermediate: replace by GO:0004725 protein tyrosine phosphatase activity; represents a substep. 1 EXP, will be automatically re-annotated
GO:0052789 mannan 1,3-beta-mannosidase activity : no annotations; EC corresponds to GO:0016985 mannan endo-1,4-beta-mannosidase activity
GO:0002083 4-hydroxybenzoate decaprenyltransferase activity 3 EXP annotations by UniProt and JaponicusDB & GO:0047293 4-hydroxybenzoate nonaprenyltransferase activity (1 EXP annotation by TAIR) > replace by GO:0008412 4-hydroxybenzoate octaprenyltransferase activity & change label to the more general 4-hydroxybenzoate polyprenyltransferase activity, since this is the level of specificity of the enzyme, see https://github.com/geneontology/go-ontology/issues/26830
Please let me know if you notice anything that seems incorrect.
Dear all,
Here are the latest terms obsoleted for the GO-EC-RHEA alignment:
https://github.com/geneontology/go-ontology/issues/28382
GO:0002083 4-hydroxybenzoate decaprenyltransferase activity 3 EXP annotations by UniProt and JaponicusDB & GO:0047293 4-hydroxybenzoate nonaprenyltransferase activity (1 EXP annotation by TAIR) > replace by GO:0008412 4-hydroxybenzoate octaprenyltransferase activity & change label to the more general 4-hydroxybenzoate polyprenyltransferase activity, since this is the level of specificity of the enzyme, see https://github.com/geneontology/go-ontology/issues/26830
Please let me know if you notice anything that seems incorrect.
Thanks, Pascale