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geneontology / go-announcements

Announcements related to ontology changes that may impact groups using GO, such as obsoletions, merges, etc.
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Obsoletion notice GO:0005355 glucose transmembrane transporter activity (with replacement) #838

Closed pgaudet closed 3 months ago

pgaudet commented 3 months ago

Dear all,

The proposal has been made to obsolete GO:0005355 glucose transmembrane transporter activity & replace it by the more specific GO:0055056 D-glucose transmembrane transporter activity. The reason for obsoletion is that L-glucose has no known physiological role, so the parent term is unnecessary, as we are not planning a term for L-glucose transport.

There are 72 EXP annotations, most will be automatically replaced, exceptof r some CGD and GeneDB, see https://github.com/geneontology/go-annotation/issues/5143 There are also 6 InterPro mappings, 1 UniRule and 2 Reactome.

You can comment on the ticket: https://github.com/geneontology/go-ontology/issues/27326

Thanks, Pascale

pgaudet commented 3 months ago

Also obsolete: GO:0005356 glucose:proton symporter activity, replace by GO:0055055 D-glucose:proton symporter activity, which oddly, is the parent. All annotations are UniProt - will be automatically updated.