geneontology / go-ontology

Source ontology files for the Gene Ontology
http://geneontology.org/page/download-ontology
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add response to terms please #10020

Closed gocentral closed 9 years ago

gocentral commented 11 years ago

Hi

I used termgenie to generate some of these, but for cases where the compound is not in ChEBI, or appears to be in certain parts of the ChEBI h'archy I was not able to use it.

Here are the terms which the template didn't work for response to anticoagulant response to aromatase inhibitor response to platelet aggregation inhibitor response to reverse transcriptase inhibitor response to asparaginase response to TNF agonist response to irinotecan

A spreadsheet is attached with links to compound descriptors and more detail If these could be added (or rejected) by the 15th Nov I can remap all the EFO ids to the correct go ones for the next EFO release thanks Helen

Reported by: parkinso

Original Ticket: geneontology/ontology-requests/9816

gocentral commented 11 years ago

Original comment by: parkinso

gocentral commented 11 years ago

Original comment by: ukemi

gocentral commented 11 years ago

[Term] +id: GO:0061476 +name: response to anticoagulant +namespace: biological_process +def: "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an anticoagulant stimulus." [GOC:dph] +is_a: GO:0042221 ! response to chemical stimulus +created_by: dph +creation_date: 2012-11-07T09:07:00Z + +[Term] +id: GO:0061477 +name: response to aromatase inhibitor +namespace: biological_process +def: "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an aromatase stimulus." [GOC:dph] +is_a: GO:0042221 ! response to chemical stimulus +created_by: dph +creation_date: 2012-11-07T09:08:36Z + +[Term] +id: GO:0061478 +name: response to platelet aggregation inhibitor +namespace: biological_process +def: "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a platelet aggregation inhibitor stimulus." [GOC:dph] +is_a: GO:0042221 ! response to chemical stimulus +created_by: dph +creation_date: 2012-11-07T09:09:37Z + +[Term] +id: GO:0061479 +name: response to reverse transcriptase inhibitor +namespace: biological_process +def: "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a reverse transcriptase inhibitor stimulus." [GOC:dph] +is_a: GO:0042221 ! response to chemical stimulus +created_by: dph +creation_date: 2012-11-07T09:10:51Z + +[Term] +id: GO:0061480 +name: response to asparaginase +namespace: biological_process +def: "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an asparaginase stimulus." [GOC:dph] +is_a: GO:0042221 ! response to chemical stimulus +created_by: dph +creation_date: 2012-11-07T09:13:08Z + +[Term] +id: GO:0061481 +name: response to TNF agonist +namespace: biological_process +def: "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a TNF agonist stimulus." [GOC:dph] +is_a: GO:0042221 ! response to chemical stimulus +created_by: dph +creation_date: 2012-11-07T09:14:07Z + +[Term] +id: GO:0061482 +name: response to irinotecan +namespace: biological_process +def: "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an irinotecan stimulus." [GOC:dph] +is_a: GO:0042221 ! response to chemical stimulus +created_by: dph +creation_date: 2012-11-07T09:15:03Z +

Original comment by: ukemi

gocentral commented 11 years ago

Original comment by: ukemi

gocentral commented 11 years ago

Shouldn't the GO:0061477 def say "an aromatase inhibitor stimulus?" I've taken the liberty of fixing it.

(noticed because I went to imitate it for topoisomerase inhibitor)

cheers, m

Original comment by: mah11

gocentral commented 11 years ago

Thanks Midori.

Original comment by: ukemi