NTR: cell septum assembly

[gocentral]

NTR: cell septum assembly NTR: cell septum assembly involved in cell cycle cytokinesis NTRs: +/-/regulation of cell septum assembly

Hello GO Editors,

As per the resolution of ticket 3602988, I would like to request cell septum terms to replace the "barrier" septum terms in use at AspGD and CGD since we believe the "barrier" part of the terms are not applicable to the vegetative growth state of the fungi we annotate. Thank you,

Diane

Reported by: dinglis

Original Ticket: geneontology/ontology-requests/9966

[gocentral]

Hi Diane,

I would make the proposed terms parents of the existing 'barrier septum' terms as barrier septum is a child of cell septum in the cell component ontology. Does that fit with the use of these terms for AspGD and CGD?

Thanks,

Tanya

Original comment by: tberardini

[gocentral]

• assigned_to: nobody --> tairtb

Original comment by: tberardini

[gocentral]

Hi Tanya,

That sounds perfect!

Thanks,

Diane

Original comment by: dinglis

[gocentral]

Added:

[Term] +id: GO:0090529 +name: cell septum assembly +namespace: biological_process +def: "The assembly and arrangement of a cellular component that is composed of peptidoglycan and often chitin in addition to other materials and usually forms perpendicular to the long axis of a cell or hypha. It grows centripetally from the cell wall to the center of the cell and often functions in the compartmentalization of a cell into two daughter cells." [GOC:di] +is_a: GO:0022607 ! cellular component assembly +is_a: GO:0032506 ! cytokinetic process

+ +[Term] +id: GO:0090530 +name: cell septum assembly involved in cell cycle cytokinesis +namespace: biological_process +def: "A cell septum assembly process that occurs during, and contributes to, cytokinesis that occurs in the context of cell cycle progression." [GOC:di] +is_a: GO:0022402 ! cell cycle process +is_a: GO:0090529 ! cell septum assembly +intersection_of: GO:0090529 ! cell septum assembly +intersection_of: part_of GO:0033205 ! cell cycle cytokinesis

Original comment by: tberardini

[gocentral]

I'll add the regulation terms via TermGenie once the source files for that are updated.

Original comment by: tberardini

[gocentral]

Regulation terms added by TG:

id: GO:1901893 name: positive regulation of cell septum assembly id: GO:1901892 name: negative regulation of cell septum assembly id: GO:1901891 name: regulation of cell septum assembly

Original comment by: tberardini

[gocentral]

• status: open --> closed-accepted

Original comment by: tberardini

[gocentral]

I can't see the term yet but how do these terms relate to the existing "barrier septum" terms (because the definiitons do not exclude barrier septum formation) Is barrier septum assembly a child, to mirror the component ontology?

cheers val

Original comment by: ValWood

[gocentral]

i.e in component it is cell septum --barrier septum

val

Original comment by: ValWood

[gocentral]

Yes, the new terms are parents. You can see the stanzas below and you should be able to see the terms now.

Original comment by: tberardini

[gocentral]

Tanya can you add a logical def for cell septum assembly to gene_ontology_xp_write. Should use templates from now on

Original comment by: cmungall

[gocentral]

• status: closed-accepted --> open-accepted

Original comment by: cmungall

[gocentral]

Done.

+[Term] +id: GO:0090529 ! cell septum assembly +intersection_of: GO:0022607 ! cellular component assembly +intersection_of: results_in_assembly_of GO:0030428 ! cell septum

I need to get into the mindset of using the templates whenever possible and resorting to OE only when I can't use a template!

Original comment by: tberardini

[gocentral]

• status: open-accepted --> closed-accepted

Original comment by: tberardini