Closed gocentral closed 9 years ago
Original comment by: paolaroncaglia
Hi Paul, welcome to SF!
Before I forget - The 'Labels' field may be used to indicate if your request is about a new term ("New term request"), or about making changes to existing terms ("Other term request"). It may also be used to indicate a specific ontology development topic, e.g. 'Apoptosis' or 'Cell cycle'. I've changed the Label for this request to 'new term request'.
Cheers, Paola.
Original comment by: paolaroncaglia
Thanks Paola, I don't think this should be a child term of GO:0030175 filopodium because in PMID: 12904473 (cited in http://en.wikipedia.org/wiki/Dendritic_filopodia) it suggests there are at least two distinct types of filopodium.
Original comment by: pauldenny
Hi Paul,
As for your comment:
I don't think this should be a child term of GO:0030175 filopodium because in PMID: 12904473 (cited in http://en.wikipedia.org/wiki/Dendritic_filopodia) it suggests there are at least two distinct types of filopodium.
We can solve this by making the existing term GO:0030175 filopodium more general. I've edited its definition, from the old "Thin, stiff protrusion extended by the leading edge of a motile cell such as a crawling fibroblast or amoeba, or an axonal growth cone; usually approximately 0.1 um wide, 5-10 um long, can be up to 50 um long in axon growth cones; contains a loose bundle of about 20 actin filaments oriented with their plus ends pointing outward." to the new "Thin, stiff protrusion extended by the leading edge of a motile cell such as a crawling fibroblast or amoeba, or an axonal or dendritic growth cone, or a dendritic shaft." and I've added a definition comment: "A filopodium may be approximately 0.1 um wide, 5-10 um long, and up to 50 um long in axon growth cones; may contain a loose bundle of about 20 actin filaments oriented with their plus ends pointing outward. Note that filopodia on dendritic shafts are distinct from other types of filopodia (even those found in dendritic growth cones) and may react differently to stimuli, as shown in PMID:12904473."
Then I'll add this new term for you, and will post the GO ID here as soon as it's live:
GO:NEW dendritic filopodium is_a filopodium part_of GO:0030425 dendrite A small, membranous protrusion found primarily on dendritic stretches of developing neurons. May receive synaptic input, and can develop into dendritic spines. def. comm.: Dendritic filopodia are generally less-well studied than dendritic spines because their transient nature makes them difficult to detect with traditional microscopy techniques, and because they are sometimes destroyed by sample preparation. Note that filopodia on dendritic shafts are distinct from other types of filopodia (even those found in dendritic growth cones) and may react differently to stimuli, as shown in PMID:12904473. PMID:24464040, GOC:PARL, GOC:pd, http://en.wikipedia.org/wiki/Dendritic_filopodia exact synonym: dendrite filopodium
As for your question
Would need to be restricted by taxon? Or not (?) because it's parents e.g. GO:0097458 neurone part - already are. The latter is correct. Terms automatically inherit taxon restrictions from their parent(s), so no need to add one here.
Thanks, Paola
Original comment by: paolaroncaglia
Paul emails:
"Thanks Paola, Excellent resolution! Best,
Paul"
Original comment by: paolaroncaglia
Note for self: all that's left to do is commit the TG term and post its ID/name here.
Original comment by: paolaroncaglia
Hi Paul,
Your new term is ready to use:
id: GO:1902737 name: dendritic filopodium
Thanks, Paola
Original comment by: paolaroncaglia
Original comment by: paolaroncaglia
dendritic filopodium - child to GO:0030425 dendrite as part_of also is_a GO:0044463 cell projection part Would need to be restricted by taxon? Or not (?) because it's parents e.g. GO:0097458 neurone part - already are. PMID:24464040 Definition: small, membranous protrusions found primarily on dendritic stretches of developing neurons. http://en.wikipedia.org/wiki/Dendritic_filopodia GOC:PARL GOC:pd
Reported by: pauldenny
Original Ticket: geneontology/ontology-requests/10666