Closed gocentral closed 6 years ago
The first set of terms could probably be GO-CAM models, and be obsoleted. ZFIN has 1 annotation to each of the first two terms; other terms are not used:
[Term] id: GO:0021864 name: radial glial cell division in forebrain namespace: biological_process def: "The mitotic division of radial glial cells in the developing forebrain." [GO_REF:0000021, GOC:cls, GOC:dgh, GOC:dph, GOC:jid, GOC:mtg_15jun06, PMID:16226447] comment: This term was added by GO_REF:0000021. is_a: GO:0051301 ! cell division relationship: occurs_in CL:0000681 ! radial glial cell relationship: part_of GO:0021846 ! cell proliferation in forebrain
[Term] id: GO:0021865 name: symmetric radial glial cell division in forebrain namespace: biological_process def: "The mitotic division of a radial glial cell giving rise to two new radial glial cells in the forebrain." [GO_REF:0000021, GOC:cls, GOC:dgh, GOC:dph, GOC:jid, GOC:mtg_15jun06, PMID:16226447] comment: This term was added by GO_REF:0000021. is_a: GO:0021864 ! radial glial cell division in forebrain
[Term] id: GO:0021866 name: asymmetric radial glial cell division in forebrain namespace: biological_process def: "The mitotic cell division of a radial glial cell giving rise to a radial glial cell and another cell type." [GO_REF:0000021, GOC:cls, GOC:dgh, GOC:dph, GOC:jid, GOC:mtg_15jun06, PMID:16226447] comment: This term was added by GO_REF:0000021. is_a: GO:0021864 ! radial glial cell division in forebrain
[Term] id: GO:0021867 name: neuron-producing asymmetric radial glial cell division in forebrain namespace: biological_process def: "The unequal mitotic division of a radial glial cell in the forebrain that gives rise to a radial glial cell and a post-mitotic neuronal progenitor." [GO_REF:0000021, GOC:cls, GOC:dgh, GOC:dph, GOC:jid, GOC:mtg_15jun06, PMID:16226447] comment: This term was added by GO_REF:0000021. is_a: GO:0021866 ! asymmetric radial glial cell division in forebrain
[Term] id: GO:0021868 name: ventricular zone cell-producing asymmetric radial glial cell division in forebrain namespace: biological_process def: "The unequal mitotic division of a forebrain radial glial cell that gives rise to a radial glial cell and a ventricular zone cell." [GO_REF:0000021, GOC:cls, GOC:dgh, GOC:dph, GOC:jid, GOC:mtg_15jun06, PMID:16226447] comment: This term was added by GO_REF:0000021. is_a: GO:0021866 ! asymmetric radial glial cell division in forebrain
The other terms seem OK to me - @sabrinatoro (+ anyone else) what do you think ?
Thanks, Pascale
@pgaudet It looks like I can re-house this annotation using a GO-CAM model using the GO term "symmetric cell division: (GO:0098725) and creating relationship to "radial glial cell" and forebrain. I will assign this case to me so it is on my radar of things to do. I'll let you know when it is done (probably tomorrow)
@pgaudet : done! these terms can be obsoleted.
Obsoletion notice sent.
also obsolete GO:0022014 radial glial cell division in subpallium 0 annotations
I think these should use occurs_in. See: https://github.com/geneontology/termgenie/issues/71
Reported by: cmungall
Original Ticket: geneontology/ontology-requests/11756