example for the protein complex discussion (assembly intermediate)

geneontology / go-ontology

Source ontology files for the Gene Ontology

http://geneontology.org/page/download-ontology

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Closed ValWood closed 8 years ago

ValWood commented 8 years ago

http://www.ebi.ac.uk/QuickGO/GTerm?id=GO:0034457#term=info A protein complex that forms a subcomplex of the 90S preribosome. In S. cerevisiae, it is composed of Mpp10p, Imp3p and Imp4p." [PMID:17515605]

Seems to be an assembly intermediate? http://europepmc.org/abstract/MED/17515605 Do we plan to represent these, or only 'functional complexes'?

bmeldal commented 8 years ago

It looks like this complex has it's own role in the ribosome assembly: http://www.ebi.ac.uk/intact/complex/details/EBI-3401419

The terms goes back before my time and was part of the proof-of-concept work for the CP. But I think it can stay as it has a defined role to play.

Birgit

ValWood commented 8 years ago

Yep that sounds OK.