bad ATPase terms

[gocentral]

As noted on the mailing list, I propose to make some molecular function terms obsolete:

%hydrolase activity, acting on acid anhydrides, involved in cellular and subcellular movement ; GO:0016821 %chaperonin ATPase activity ; GO:0003763 ; EC:3.6.4.9 %dynein ATPase activity ; GO:0008567 ; EC:3.6.4.2 %myosin ATPase activity ; GO:0008570 ; EC:3.6.4.1 %non-chaperonin molecular chaperone ATPase activity ; GO:0008571 ; EC:3.6.4.10 %nucleoplasmin ATPase activity ; GO:0008572 ; EC:3.6.4.11 %peroxisome-assembly ATPase activity ; GO:0008573 ; EC:3.6.4.7 %vesicle-fusing ATPase activity ; GO:0008576 ; EC:3.6.4.6

[some stuff, e.g. MetaCyc dbxrefs & synonyms, not shown]

These terms were apparently added for the sake of consistency with EC, but they do not conform to GO function term criteria. The parent (16821) and several of the children incorporate process information in the term strings. Other children look like gene products, and some of them also have process information in the definitions.

Note that we can keep these children of GO:0016821, because they were improved as part of SF 800360: %plus-end-directed microtubule motor activity ; GO:0008574 ; EC:3.6.4.4 %minus-end-directed microtubule motor activity ; GO:0008569 ; EC:3.6.4.5

and this one seems to be OK as is: %microtubule-severing ATPase activity ; GO:0008568 ; EC:3.6.4.3

The above can go under ATPase activity ; GO:0016887 or one of its children.

Specifics:

%hydrolase activity\, acting on acid anhydrides\, involved in cellular and subcellular movement ; G\ O:0016821 ; EC:3.6.4.-

• reason: includes process information
• reannotate to: hydrolase activity, acting on acid anhydrides

%chaperonin ATPase activity ; GO:0003763 ; EC:3.6.4.9

• reason: represents a gene product; definition includes process information
• reannotate to: ATPase activity ; GO:0016887

%dynein ATPase activity ; GO:0008567 ; EC:3.6.4.2

• reason: represents a gene product; definition includes process information
• reannotate to: microtubule motor activity ; GO:0003777 or child, microtubule-based movement ; GO:0007018 or child also make 'dynein' a narrower-than synonym of GO:0003777

%myosin ATPase activity ; GO:0008570 ; EC:3.6.4.1

• reason: represents a gene product; definition includes process information
• reannotate to: microfilament motor activity ; GO:0000146, actin filament-based movement ; GO:0030048 or child

%non-chaperonin molecular chaperone ATPase activity ; GO:0008571 ; EC:3.6.4.10

• reason: refers to gene product information
• reannotate to: ATPase activity ; GO:0016887, protein folding ; GO:0006457

%nucleoplasmin ATPase activity ; GO:0008572 ; EC:3.6.4.11

• reason: represents a gene product; definition includes process information
• reannotate to: ATPase activity ; GO:0016887, chromatin assembly/disassembly ; GO:0006333 or child

%peroxisome-assembly ATPase activity ; GO:0008573 ; EC:3.6.4.7

• reason: includes process information
• reannotate to: ATPase activity ; GO:0016887, peroxisome organization and biogenesis ; GO:0007031 or child

%vesicle-fusing ATPase activity ; GO:0008576 ; EC:3.6.4.6

• reason: includes process information
• reannotate to: ATPase activity ; GO:0016887, membrane fusion ; GO:0006944 or child, vesicle-mediated transport ; GO:0016192 or child

Reported by: mah11

Original Ticket: "geneontology/ontology-requests/1332":https://sourceforge.net/p/geneontology/ontology-requests/1332

[gocentral]

• assigned_to: nobody --> gomidori

Original comment by: mah11

[gocentral]

Logged In: YES user_id=436423

done as described.

Original comment by: mah11

[gocentral]

• status: open --> closed-fixed

Original comment by: mah11