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geneontology / go-ontology

Source ontology files for the Gene Ontology
http://geneontology.org/page/download-ontology
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cellular response to bacterium #13426

Open slaulederkind opened 7 years ago

slaulederkind commented 7 years ago

I would like to see “cellular response to bacterium” added to GO under the parent term “response to bacterium” (GO:0009617). The definition could be something like “Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a bacterium.” Example: PMID:28259042

vanaukenk commented 7 years ago

Hi @slaulederkind

There are some existing terms about cellular responses to specific bacterial molecules, so here is a proposal for where I think this new term might fit:

GO:0009617 response to bacterium -GO:NEW cellular response to bacterium --GO:0071219 cellular response to molecule of bacterial origin ---GO:0071220 cellular response to bacterial lipoprotein ---GO:0071222 cellular response to lipopolysaccharide ---GO:0071223 cellular response to lipoteichoic acid ---GO:0071224 cellular response to peptidoglycan

See: http://amigo.geneontology.org/amigo/term/GO:0071219

@ukemi - given #12849 are we okay with adding a new cellular-level response term?

ukemi commented 7 years ago

I think we might want to hold off on the new cellular level-term until after the GOC meeting.

slaulederkind commented 7 years ago

Waiting until after the meeting is fine.

vanaukenk commented 7 years ago

Okay, thank you both.
I've added GOC meeting and pending labels so we don't lose track of this issue.