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geneontology / go-ontology

Source ontology files for the Gene Ontology
http://geneontology.org/page/download-ontology
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Change parent of diphthine-ammonia ligase activity (GO:0017178) #15398

Closed sjm41 closed 6 years ago

sjm41 commented 6 years ago

diphthine-ammonia ligase activity (GO:0017178) Def: Catalysis of the reaction: ATP + diphthine + NH(4)(+) = ADP + diphthamide + H(+) + phosphate. Xref: EC:6.3.1.14

Currently child of: acid-amino acid ligase activity (GO:0016881) Def: Catalysis of the ligation of an acid to an amino acid via a carbon-nitrogen bond, with the concomitant hydrolysis of the diphosphate bond in ATP or a similar triphosphate. Xref: EC:6.3.2.-

Ought to be changed to be child of: acid-ammonia (or amide) ligase activity (GO:0016880) Def: Catalysis of the ligation of an acid to ammonia (NH3) or an amide via a carbon-nitrogen bond, with the concomitant hydrolysis of the diphosphate bond in ATP or a similar triphosphate. Xref: EC:6.3.1.-

(This is likely explained by this activity being previously under 6.3.2.- in EC: https://enzyme.expasy.org/EC/6.3.1.14 Diphthine--ammonia ligase. Comment: Formerly EC 6.3.2.22.)

sjm41 commented 6 years ago

tagging @hattrill

ukemi commented 6 years ago

Done here: https://github.com/geneontology/go-ontology/pull/15436