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geneontology / go-ontology

Source ontology files for the Gene Ontology
http://geneontology.org/page/download-ontology
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obsolete GO:0030043 actin filament fragmentation #18555

Open ValWood opened 4 years ago

ValWood commented 4 years ago

obsolete GO:0030043 actin filament fragmentation GO:0030043 actin filament fragmentation The severing of actin filaments into numerous short fragments, usually mediated by actin severing proteins. is actually describing "severing" but we are going to move "actin sev ering" to be a molceular function

14 EXP annotations

ValWood commented 4 years ago

do you agree? or merge into

GO:0051014 actin filament severing The process in which an actin filament is broken down into smaller filaments. PMID:14657234

pending decision on https://github.com/geneontology/go-ontology/issues/18437

ValWood commented 3 years ago

merge, (for now) although severing is probably really an MF, that is in another ticket?

ValWood commented 3 months ago

I think we should also obsolete GO:0051014 actin filament severing (42 EXP) because this is an activity.

All should go to (has related synonyms:

actin filament severing activity | related F-actin severing | exact barbed-end actin capping/severing activity | related

I will create an actin severing MF term and then suggest obsoletion with merge into GO:0030036 actin cytoskeleton organization and a recommendation to make the MF annotation

ValWood commented 3 months ago

GO:0003789 | actin filament severing activity already exists

Also, need to check if fragmentation has a different meaning?