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geneontology / go-ontology

Source ontology files for the Gene Ontology
http://geneontology.org/page/download-ontology
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Obsolete single step process for ADP ribosylation #23249

Open pgaudet opened 2 years ago

pgaudet commented 2 years ago

Obsolete:

Look into:

To be completed.

pfey03 commented 2 years ago

We have 7 EXP annotations in Dicty and I will look into these in the next days. Please don't obsolete yet.

pgaudet commented 2 years ago

Dear all,

The proposal has been made to obsolete the following single step process for protein ADP ribosylation:

There are 84 manual annotations to these terms that still need review, see https://github.com/geneontology/go-annotation/issues/4225

Contributor  (Assigned by)
BHF-UCL 11
CACAO 4
dictyBase 1
FlyBase 3
GeneDB 1
GR 1
MGI 9
MTBBASE 1
RGD 4
TAIR 1
UniProt 45

There are 6 InterPro mappings and 1 Unirule, see https://github.com/geneontology/go-annotation/issues/4225

We are opening a comment period for this proposed obsoletion. We’d like to proceed and obsolete this term on July 5th, 2022. Unless objections are received by July 5th, 2022, we will assume that you agree to this change.

Thanks, Pascale

pfey03 commented 2 years ago

I'm done with Dicty, but not yet reflected in QuickGO. I also disputed an annotation from CACA and there are still IBA

pgaudet commented 2 years ago

Obsoleted

GO:0006471 protein ADP-ribosylation GO:0018120 peptidyl-arginine ADP-ribosylation GO:0018122 peptidyl-asparagine ADP-ribosylation GO:0018123 peptidyl-cysteine ADP-ribosylation GO:0018424 peptidyl-glutamic acid poly-ADP-ribosylation GO:0018312 peptidyl-serine ADP-ribosylation GO:0140289 protein mono-ADP-ribosylation

Still need to