geneontology / go-ontology

Source ontology files for the Gene Ontology
http://geneontology.org/page/download-ontology
Creative Commons Attribution 4.0 International
219 stars 40 forks source link

Term merge: protection from non-homologous end joining at telomere GO:0031848 -> telomere capping GO:0016233 #23997

Open Antonialock opened 1 year ago

Antonialock commented 1 year ago

to me it sounds like protection from non-homologous end joining at telomere A process that prevents non-homologous end joining at telomere, thereby ensuring that telomeres do not fuse.

is one "job" of elomere capping telomere capping is defined as A process in which telomeres are protected from degradation and fusion, thereby ensuring chromosome stability by protecting the ends from both degradation and from being recognized as damaged DNA. May be mediated by specific single- or double-stranded telomeric DNA binding proteins.

telomere protection has (an odd?) connection to DNA damage response image

ValWood commented 1 year ago

I don't see any obvious difference between these processes.

ValWood commented 1 year ago

telomere capping is just "what the cap does" telomere cap complex (GO:0000782) but "telomere protection " is a better way of describing the process.

RLovering commented 1 year ago

There are 2 child terms for telomere capping:

GO ID name % proteins with EXP evidence number of proteins with EXP evidence
GO:0016233 telomere capping 81.67 49
GO:0031848 protection from non-homologous end joining at telomere 23.33 14
GO:0031860 telomeric 3' overhang formation 11.67 7

I agree that the is_a parent for protection from non-homologous end joining at telomere should be telomere maintenance not the DNA damage term.

Is it useful to group proteins involved in telomeric 3' overhang formation separately from protection from non-homologous end joining at telomere? if not then I agree merge both terms into telomere capping (renaming telomere protection seems like a good idea).