geneontology / go-ontology

Source ontology files for the Gene Ontology
http://geneontology.org/page/download-ontology
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NTR: transforming growth factor beta receptor superfamily signaling pathway #25962

Closed vanaukenk closed 1 year ago

vanaukenk commented 1 year ago

Please provide as much information as you can:

transforming growth factor beta receptor superfamily signaling pathway

The series of molecular signals initiated by an extracellular ligand binding to a member of the transforming growth factor receptor superfamily, and ending with the regulation of a downstream cellular process, e.g. transcription.

PMID: 28096268 PMID: 22651914

This will be used to annotate some C. elegans genes, e.g. daf-1, a Type I receptor, that participate in signaling pathways that don't necessarily neatly map on to one of the existing subclasses of TGFbeta superfamily signaling, i.e. activin, BMP, or TGFbeta.

GO:0007178. transmembrane receptor protein serine/threonine kinase signaling pathway

activin receptor signaling pathway (GO:0032924) BMP receptor signaling pathway (GO:0030509) transforming growth factor beta receptor signaling pathway (GO:0007179)

Please also see: https://github.com/geneontology/go-ontology/issues/23449

pgaudet commented 1 year ago

Done in #23449 but I am not sure about taxon constraints

see also https://github.com/geneontology/go-annotation/issues/4231

@vanaukenk @hattrill @Antonialock @ValWood

pgaudet commented 1 year ago

+[Term] +id: GO:0141091 +name: transforming growth factor beta receptor superfamily signaling pathway +namespace: biological_process +def: "The series of molecular signals initiated by an extracellular ligand binding to a member of the transforming growth factor receptor superfamily, and ending with the regulation of a downstream cellular process, e.g. transcription." [PMID:22651914, PMID:28096268] +synonym: "TGF-beta receptor superfamily signaling pathway" EXACT [] +synonym: "TGF-beta receptor superfamily signalling pathway" EXACT [] +synonym: "TGFbeta receptor superfamily signaling pathway" EXACT [] +synonym: "TGFbeta receptor superfamily signalling pathway" EXACT [] +synonym: "transforming growth factor beta receptor superfamily signalling pathway" EXACT [] +is_a: GO:0007178 ! transmembrane receptor protein serine/threonine kinase signaling pathway +created_by: pg +creation_date: 2023-08-30T05:48:29Z

ValWood commented 1 year ago

perhaps "only in metazoa"? (at least never in fungi ?)