geneontology / go-ontology

Source ontology files for the Gene Ontology
http://geneontology.org/page/download-ontology
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NTR: ligand-activated transcription repressor activity #26077

Closed pgaudet closed 1 year ago

pgaudet commented 1 year ago

Please provide as much information as you can:

pgaudet commented 1 year ago

+[Term] +id: GO:0141096 +name: ligand-activated transcription repressor activity +namespace: molecular_function +def: "A DNA-binding transcription repressor activity regulated by binding to a ligand and that inhibits the transcription of specific genes and gene sets." [PMID:21555518] +is_a: GO:0001217 ! DNA-binding transcription repressor activity +is_a: GO:0098531 ! ligand-activated transcription factor activity +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/26077" xsd:anyURI +created_by: pg +creation_date: 2023-09-11T08:07:51Z

pgaudet commented 1 year ago

+[Term] +id: GO:0141097 +name: ligand-activated transcription activator activity +namespace: molecular_function +def: "A DNA-binding transcription activator activity regulated by binding to a ligand and that activates the transcription of specific genes and gene sets." [GOC:pg] +is_a: GO:0001216 ! DNA-binding transcription activator activity +is_a: GO:0098531 ! ligand-activated transcription factor activity +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/26077" xsd:anyURI +created_by: pg +creation_date: 2023-09-11T08:11:03Z +

ValWood commented 1 year ago

Aren't all gene-specific transcription activators going to be ligand-activated in some way?

pgaudet commented 1 year ago

are they?

ValWood commented 1 year ago

I don't know but the TFs need to be activated to repress by something? I guess it depends how the "ligand" is defined?