search

geneontology / go-ontology

Source ontology files for the Gene Ontology
http://geneontology.org/page/download-ontology
Creative Commons Attribution 4.0 International
222 stars 40 forks source link

Logical definitions for transporters #26260

Open pgaudet opened 1 year ago

pgaudet commented 1 year ago

Hi @balhoff

I'd like to make LD for transport (BP): I propose:

1) transmembrane transport transmembrane transport and 'has end location' some GO cellular anatomical entity and has primary input some 'chemical entity'

optional: has start location?

2) vesicle-mediated transport vesicle-mediated transport and 'has end location' some GO cellular anatomical entity and has primary input some 'chemical entity'

optional: has start location?

would that be a good place to start?

Thanks, Pascale

@ValWood @edwong57

ValWood commented 4 days ago

Looks good (although I don't completely understand logical defs)

balhoff commented 2 days ago

I will make a bulk update for this, and @pgaudet and I will review the approach to see if more people can do these in future.