raymond91125
commented
8 months ago Dear all,
The proposal has been made to obsolete GO:0102551homogentisate geranylgeranyl transferase activity.
The reason for obsoletion is that this term is equivalent to GO:0010356 homogentisate geranylgeranyl transferase activity.There are no experimental annotations to this term. There are no mappings to this term. This term is not present in any subset.
This term is being replaced by GO:0010356 homogentisate geranylgeranyl transferase activity.
Any comments can be added to the issue: geneontology/go-ontology#26832
Thanks,
Raymond
sjm41
Whilst working on #26829, I found that the following pairs of terms are identical and need merging:
GO:0010356 & GO:0102551 GO:0102661 & GO:0010357 GO:0047294 & GO:0043889 GO:0043888 & GO:0047295
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id: GO:0010356 name: homogentisate geranylgeranyltransferase activity namespace: molecular_function def: "Catalysis of the reaction: homogentisic acid + geranylgeranyl diphosphate = 2-methyl-6-geranylgeranylplastoquinol." [PMID:16989822] xref: EC:2.5.1.116 is_a: GO:0010354 ! homogentisate prenyltransferase activity
id: GO:0102551 name: homogentisate geranylgeranyl transferase activity namespace: molecular_function def: "Catalysis of the reaction: 2-trans,6-trans,10-trans-geranylgeranyl diphosphate + homogentisate + H+ = diphosphoric acid + 2-methyl-6-geranylgeranyl-1,4-benzoquinol + carbon dioxide." [EC:2.5.1.116, GOC:pz] xref: EC:2.5.1.116 xref: MetaCyc:RXN-14929 xref: RHEA:38003 is_a: GO:0016765 ! transferase activity, transferring alkyl or aryl (other than methyl) groups
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id: GO:0102661 name: homogentisate solanyltransferase activity namespace: molecular_function def: "Catalysis of the reaction: all-trans-nonaprenyl diphosphate + homogentisate + H+ = 2-methyl-6-all-trans-nonaprenyl-1,4-benzoquinone + carbon dioxide + diphosphoric acid." [EC:2.5.1.117, GOC:pz] xref: EC:2.5.1.117 xref: MetaCyc:RXN-2761 is_a: GO:0016765 ! transferase activity, transferring alkyl or aryl (other than methyl) groups
id: GO:0010357 name: homogentisate solanesyltransferase activity namespace: molecular_function def: "Catalysis of the reaction: all-trans-nonaprenyl diphosphate + H(+) + homogentisate = 2-methyl-6-all-trans-nonaprenylbenzene-1,4-diol + CO2 + diphosphate. 2-methyl-6-solanyl-1,4-benzoquinonone is also known as 2-methyl-6-solanesylplastoquinol and all-trans-nonaprenyl diphosphate as solanesyl diphosphate." [PMID:16989822, RHEA:37995] xref: EC:2.5.1.117 xref: RHEA:37995 is_a: GO:0010354 ! homogentisate prenyltransferase activity property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/26829" xsd:anyURI
===
id: GO:0047294 name: phosphoglycerol geranylgeranyltransferase activity namespace: molecular_function def: "Catalysis of the reaction: sn-glycerol 1-phosphate + all-trans-geranylgeranyl diphosphate = sn-3-O-(geranylgeranyl)glycerol 1-phosphate + diphosphate." [EC:2.5.1.41, RHEA:23404] synonym: "geranylgeranyl diphosphate:sn-glyceryl phosphate geranylgeranyltransferase activity" RELATED [EC:2.5.1.41] synonym: "geranylgeranyl-transferase activity" RELATED [EC:2.5.1.41] synonym: "glycerol phosphate geranylgeranyltransferase activity" RELATED [EC:2.5.1.41] xref: EC:2.5.1.41 xref: KEGG_REACTION:R04158 xref: MetaCyc:2.5.1.41-RXN xref: RHEA:23404 is_a: GO:0016765 ! transferase activity, transferring alkyl or aryl (other than methyl) groups
id: GO:0043889 name: (S)-3-O-geranylgeranylglyceryl phosphate synthase activity namespace: molecular_function def: "Catalysis of the reaction:(2E,6E,10E)-geranylgeranyl diphosphate + sn-glycerol 1-phosphate = diphosphate + sn-3-O-(geranylgeranyl)glycerol 1-phosphate." [PMID:12801917, PMID:17253090, PMID:8408023, RHEA:23404] comment: This function is involved in archaeal lipid synthesis. synonym: "(S)-3-O-geranylgeranylglycerylphosphate synthase activity" EXACT [] synonym: "(S)-GGGP synthase activity" EXACT [] synonym: "GGGP synthase activity" EXACT [] synonym: "GGGPS" EXACT [] xref: EC:2.5.1.41 is_a: GO:0004659 ! prenyltransferase activity
===
id: GO:0043888 name: (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase activity namespace: molecular_function def: "Catalysis of the reaction: (2E,6E,10E)-geranylgeranyl diphosphate + sn-3-O-(geranylgeranyl)glycerol 1-phosphate = 2,3-bis-O-(geranylgeranyl)-sn-glycerol 1-phosphate + diphosphate." [PMID:15356000, PMID:16494480, RHEA:18109] comment: This function is involved in archaeal lipid synthesis. synonym: "2,3-dGGGPS" EXACT [] synonym: "DGGGP synthase activity" EXACT [] synonym: "DGGGPS" EXACT [] synonym: "UbiA" RELATED [] xref: EC:2.5.1.42 is_a: GO:0002094 ! polyprenyltransferase activity property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/26829" xsd:anyURI
id: GO:0047295 name: geranylgeranylglycerol-phosphate geranylgeranyltransferase activity namespace: molecular_function def: "Catalysis of the reaction: sn-3-O-(geranylgeranyl)glycerol 1-phosphate + all-trans-geranylgeranyl diphosphate = 2,3-di-O-(geranylgeranyl)glycerol 1-phosphate + diphosphate." [EC:2.5.1.42, RHEA:18109] synonym: "geranylgeranyl diphosphate:sn-3-O-(geranylgeranyl)glycerol 1-phosphate geranylgeranyltransferase activity" RELATED [EC:2.5.1.42] synonym: "geranylgeranyloxyglycerol phosphate geranylgeranyltransferase activity" RELATED [EC:2.5.1.42] synonym: "geranylgeranyltransferase II" RELATED [EC:2.5.1.42] xref: EC:2.5.1.42 xref: KEGG_REACTION:R04520 xref: MetaCyc:2.5.1.42-RXN xref: RHEA:18109 is_a: GO:0016765 ! transferase activity, transferring alkyl or aryl (other than methyl) groups