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geneontology / go-ontology

Source ontology files for the Gene Ontology
http://geneontology.org/page/download-ontology
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Create slim for Ribbon display for plants #27168

Closed pgaudet closed 8 months ago

pgaudet commented 8 months ago

For display in UniProt @alexsign

pgaudet commented 8 months ago

MF terms GO:0003723 RNA binding GO:0003774 cytoskeletal motor activity GO:0003824 catalytic activity GO:0005198 structural molecule activity GO:0005215 transporter activity GO:0005515 protein binding GO:0008289 lipid binding GO:0016301 kinase activity GO:0016740 transferase activity GO:0016787 hydrolase activity GO:0030234 enzyme regulator activity GO:0030246 carbohydrate binding GO:0038023 signaling receptor activity GO:0045182 translation regulator activity GO:0140110 transcription regulator activity GO:0140299 small molecule sensor activity

BP terms GO:0006810 transport GO:0009058 biosynthetic process GO:0006950 response to stress GO:0016043 cellular component organization GO:0042221 response to chemical GO:0009056 catabolic process GO:0006629 lipid metabolic process GO:0007165 signal transduction GO:0005975 carbohydrate metabolic process GO:0019538 protein metabolic process GO:0006259 DNA metabolic process GO:0007049 cell cycle GO:0006091 generation of precursor metabolites and energy GO:0000003 reproductive process GO:0030154 cell differentiation GO:0048856 anatomical structure development GO:0015979 photosynthesis GO:0019748 secondary metabolic process GO:0009908 flower development GO:0009856 pollination GO:0012501 programmed cell death GO:0007623 circadian rhythm GO:0044238 primary metabolic process GO:0010468 regulation of gene expression

CC terms GO:0005576 extracellular region GO:0005618 cell wall GO:0005634 nucleus GO:0005737 cytoplasm GO:0005739 mitochondrion GO:0005768 endosome GO:0005773 vacuole GO:0005777 peroxisome GO:0005783 endoplasmic reticulum GO:0005794 Golgi apparatus GO:0005840 ribosome GO:0005856 cytoskeleton GO:0005886 plasma membrane GO:0009507 chloroplast GO:0009536 plastid GO:0009579 thylakoid

pgaudet commented 8 months ago

Coverage of A. thaliana genes: ~ 90% of the full plant subset, for each aspect. See attached excel for more details. plant-ribbon.xlsx