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geneontology / go-ontology

Source ontology files for the Gene Ontology
http://geneontology.org/page/download-ontology
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Create slim for Ribbon display for eukaryote cellular processes #27297

Closed pgaudet closed 5 months ago

pgaudet commented 6 months ago

To cover non-animal eukaryotes (animals are covered by the AGR subset)

ValWood commented 6 months ago

https://www.pombase.org/browse-curation/fission-yeast-bp-go-slim-terms ?

pgaudet commented 6 months ago

Thanks Val, that was a very useful point to start.

pgaudet commented 5 months ago

eukaryote cellular process subset - BP

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GO:0006091 | generation of precursor metabolites and energy -- | -- GO:0006260 | DNA replication GO:0006281 | DNA repair GO:0006310 | DNA recombination GO:0006351 | DNA-templated transcription GO:0006412 | translation GO:0006457 | protein folding GO:0006629 | lipid metabolic process GO:0006914 | autophagy GO:0007155 | cell adhesion GO:0008152 | metabolic process GO:0010468 | regulation of gene expression GO:0012501 | programmed cell death GO:0016070 | RNA metabolic process GO:0016192 | vesicle-mediated transport GO:0019725 | cellular homeostasis GO:0019748 | secondary metabolic process GO:0022402 | cell cycle process GO:0022607 | cellular component assembly GO:0023052 | signaling GO:0044238 | primary metabolic process GO:0048870 | cell motility GO:0055085 | transmembrane transport GO:0071554 | cell wall organization or biogenesis GO:0098754 | detoxification

pgaudet commented 5 months ago

eukaryote cellular process subset - CC

<html xmlns:v="urn:schemas-microsoft-com:vml" xmlns:o="urn:schemas-microsoft-com:office:office" xmlns:x="urn:schemas-microsoft-com:office:excel" xmlns="http://www.w3.org/TR/REC-html40">

GO:0005576 | extracellular region -- | -- GO:0005618 | cell wall GO:0005634 | nucleus GO:0005739 | mitochondrion GO:0005768 | endosome GO:0005773 | vacuole GO:0005777 | peroxisome GO:0005783 | endoplasmic reticulum GO:0005794 | Golgi apparatus GO:0005815 | microtubule organizing center GO:0005829 | cytosol GO:0005840 | ribosome GO:0005856 | cytoskeleton GO:0005886 | plasma membrane GO:0031012 | extracellular matrix GO:0032991 | protein-containing complex GO:0042995 | cell projection GO:0045202 | synapse

pgaudet commented 5 months ago

eukaryote cellular process subset - MF

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GO:0003677 | DNA binding -- | -- GO:0003723 | RNA binding GO:0003774 | cytoskeletal motor activity GO:0003824 | catalytic activity GO:0005198 | structural molecule activity GO:0005215 | transporter activity GO:0005515 | protein binding GO:0008289 | lipid binding GO:0016209 | antioxidant activity GO:0036094 | small molecule binding GO:0045182 | translation regulator activity GO:0060090 | molecular adaptor activity GO:0098772 | molecular function regulator activity GO:0140104 | molecular carrier activity GO:0140110 | transcription regulator activity GO:0140223 | general transcription initiation factor activity GO:0140299 | small molecule sensor activity GO:0140313 | molecular sequestering activity