geneontology / go-ontology

Source ontology files for the Gene Ontology
http://geneontology.org/page/download-ontology
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GO:0070733 - extend enzyme activity to include L-lysine residues in target proteins #28233

Closed Pauldenny closed 4 months ago

Pauldenny commented 4 months ago
pgaudet commented 4 months ago

@kaxelsen Do you think that can also be changed in EC? https://enzyme.expasy.org/EC/2.7.7.108

kaxelsen commented 4 months ago

The enzyme described here is not an EC 2.7.7.108. EC 2.7.7.108 AMPylates target proteins. This enzyme AMPylates an RNA molecule to facilitate the ligation of this RNA molecule to another RNA. The AMPylation of the lysine is an auto-AMPylation and is a transient step in the overall AMPylation of the 5'-P of the RNA substrate.

pgaudet commented 4 months ago

Ah ok - then we should no add this. Thanks !

@Pauldenny Can you use 'GO:0003972 RNA ligase (ATP) activity' to annotate this? The mechanism of the reaction may be different, but the overall reaction is the same.

Thanks, Pascale

Pauldenny commented 4 months ago

Done - thanks!