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geneontology / go-ontology

Source ontology files for the Gene Ontology
http://geneontology.org/page/download-ontology
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Bulk obsoletion of catalytic terms with UM-BBD mapping only, and no annotations #28261

Closed sjm41 closed 3 months ago

sjm41 commented 3 months ago

The following are catalytic terms with only UM-BBD mapping (no EC/RHEA/MetaCyc/KEGG mapping) and have no annotations - see list here: https://docs.google.com/spreadsheets/d/18UFJV5IpOZJIcWyWMpWH8SkFUMfkfpKqVR-gTuoOh8s/edit

Note that the UM-BBD xref should be removed as both the term and def xref as part of this process.

We propose they are obsoleted in bulk. No need to send notifications for annotation review, since there are no annotations.

Please:

@pgaudet

GOID Term label
GO:0004028 3-chloroallyl aldehyde dehydrogenase activity
GO:0009389 dimethyl sulfoxide reductase activity
GO:0018547 nitroglycerin reductase activity
GO:0008785 alkyl hydroperoxide reductase activity
GO:0018641 6-hydroxy-3-methyl-2-oxo-1,2-dihydroquinoline 6-monooxygenase activity
GO:0018742 epoxide hydrolase B activity
GO:0034824 citronellyl-CoA dehydrogenase activity
GO:0034820 4,9-DSHA hydrolase activity
GO:0034556 nitrobenzoate nitroreductase activity
GO:0034832 geranial dehydrogenase activity
GO:0034930 1-hydroxypyrene sulfotransferase activity
GO:0018446 pinocarveol dehydrogenase activity
GO:0018447 chloral hydrate dehydrogenase activity
GO:0018448 hydroxymethylmethylsilanediol oxidase activity
GO:0018450 myrtenol dehydrogenase activity
GO:0018451 epoxide dehydrogenase activity
GO:0018453 2-hydroxytetrahydrofuran dehydrogenase activity
GO:0018469 myrtenal dehydrogenase activity
GO:0018470 4-hydroxybutaraldehyde dehydrogenase activity
GO:0018472 1-hydroxy-2-naphthaldehyde dehydrogenase activity
GO:0018473 cis-2-methyl-5-isopropylhexa-2,5-dienal dehydrogenase activity
GO:0018475 trans-2-methyl-5-isopropylhexa-2,5-dienal dehydrogenase activity
GO:0018486 2-butanone oxidase activity
GO:0018487 vanillate O-demethylase (anaerobic) activity
GO:0018495 2-hydroxycyclohexane-1-carboxyl-CoA dehydrogenase activity
GO:0018496 2,6-dihydroxycyclohexane-1-carboxyl-CoA dehydrogenase activity
GO:0018497 1-chloro-2,2-bis(4-chlorophenyl)ethane dehydrogenase activity
GO:0018499 cis-2,3-dihydrodiol DDT dehydrogenase activity
GO:0018500 trans-9R,10R-dihydrodiolphenanthrene dehydrogenase activity
GO:0018501 cis-chlorobenzene dihydrodiol dehydrogenase activity
GO:0018503 trans-1,2-dihydrodiolphenanthrene dehydrogenase activity
GO:0018508 cis-1,2-dihydroxycyclohexa-3,5-diene-1-carboxylate dehydrogenase activity
GO:0018526 2-aminobenzoyl-CoA reductase activity
GO:0018528 iminodiacetate dehydrogenase activity
GO:0018550 tetrachloro-p-hydroquinone reductive dehalogenase activity
GO:0018553 3-(2,3-dihydroxyphenyl)propionate 1,2-dioxygenase activity
GO:0018585 fluorene oxygenase activity
GO:0018586 mono-butyltin dioxygenase activity
GO:0018588 tri-n-butyltin dioxygenase activity
GO:0018589 di-n-butyltin dioxygenase activity
GO:0018590 methylsilanetriol hydroxylase activity
GO:0018593 4-chlorophenoxyacetate monooxygenase activity
GO:0018596 dimethylsilanediol hydroxylase activity
GO:0018598 hydroxymethylsilanetriol oxidase activity
GO:0018599 2-hydroxyisobutyrate 3-monooxygenase activity
GO:0018686 6-hydroxy pseudo-oxynicotine monooxygenase activity
GO:0018688 DDT 2,3-dioxygenase activity
GO:0018689 naphthalene disulfonate 1,2-dioxygenase activity
GO:0018703 2,4-dichlorophenoxyacetate dehalogenase activity
GO:0018705 1,2-dichloroethene reductive dehalogenase activity
GO:0018707 1-phenanthrol methyltransferase activity
GO:0018715 9-phenanthrol UDP-glucuronosyltransferase activity
GO:0018716 1-phenanthrol glycosyltransferase activity
GO:0018717 9-phenanthrol glycosyltransferase activity
GO:0018718 1,2-dihydroxy-phenanthrene glycosyltransferase activity
GO:0018721 trans-9R,10R-dihydrodiolphenanthrene sulfotransferase activity
GO:0018722 1-phenanthrol sulfotransferase activity
GO:0018723 3-phenanthrol sulfotransferase activity
GO:0018724 4-phenanthrol sulfotransferase activity
GO:0018725 trans-3,4-dihydrodiolphenanthrene sulfotransferase activity
GO:0018726 9-phenanthrol sulfotransferase activity
GO:0018727 2-phenanthrol sulfotransferase activity
GO:0018731 1-oxa-2-oxocycloheptane lactonase activity
GO:0018734 butyrolactone hydrolase activity
GO:0018736 6-oxo-2-hydroxycyclohexane-1-carboxyl-CoA hydrolase activity
GO:0018737 2-ketocyclohexane-1-carboxyl-CoA hydrolase activity
GO:0018743 phenanthrene-9,10-epoxide hydrolase (9R,10R-forming) activity
GO:0018745 epoxide hydrolase A activity
GO:0018746 phenanthrene-3,4-epoxide hydrolase activity
GO:0018747 phenanthrene-1,2-epoxide hydrolase activity
GO:0018748 iprodione amidohydrolase activity
GO:0018749 (3,5-dichlorophenylurea)acetate amidohydrolase activity
GO:0018751 3,5-dichlorophenylcarboximide hydrolase activity
GO:0018758 2,4-dihydroxy-6-(N'-ethyl)amino-1,3,5-triazine aminohydrolase activity
GO:0018767 2-hydroxy-6-oxo-7-methylocta-2,4-dienoate hydrolase activity
GO:0018769 2-hydroxy-6-oxoocta-2,4-dienoate hydrolase activity
GO:0018770 6-oxo-2-hydroxy-7-(4'-chlorophenyl)-3,8,8-trichloroocta-2E,4E,7-trienoate hydrolase activity
GO:0018776 trans-chloroacrylic acid dehalogenase activity
GO:0018780 dichloroacetate halidohydrolase activity
GO:0018781 S-triazine hydrolase activity
GO:0018782 cis-chloroacrylic acid dehalogenase activity
GO:0018791 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate decarboxylase activity
GO:0018792 bis(4-chlorophenyl)acetate decarboxylase activity
GO:0018793 3,5-dibromo-4-hydroxybenzoate decarboxylase activity
GO:0018794 2-hydroxyisobutyrate decarboxylase activity
GO:0018795 2-hydroxy-2-methyl-1,3-dicarbonate decarboxylase activity
GO:0018802 2,4-dihydroxyhept-2-ene-1,7-dioate aldolase activity
GO:0018808 trans-4-(1'-hydroxynaphth-2'-yl)-2-oxobut-3-enoate hydratase-aldolase activity
GO:0018809 E-phenylitaconyl-CoA hydratase activity
GO:0018810 trans-4-[2-(3-hydroxy)-thionaphthenyl]-2-oxo-3-butenoate hydratase activity
GO:0018816 2-hydroxyisobutyrate dehydratase activity
GO:0018825 triethanolamine lyase activity
GO:0018828 halohydrin hydrogen-halide-lyase A activity
GO:0018832 halohydrin hydrogen-halide-lyase B activity
GO:0018837 2-hydroxy-2H-benzo[h]chromene-2-carboxylate isomerase activity
GO:0018854 3-isopropenyl-6-oxoheptanoyl-CoA synthetase activity
GO:0018857 2,4-dichlorobenzoate-CoA ligase activity
GO:0018863 phenanthrene-9,10-epoxide hydrolase (9S,10S-forming) activity
GO:0034522 cis-1,2-dihydroxy-1,2-dihydro-8-carboxynaphthalene dehydrogenase activity
GO:0034523 3-formylsalicylate oxidase activity
GO:0034524 2-hydroxyisophthalate decarboxylase activity
GO:0034525 1-naphthaldehyde dehydrogenase activity
GO:0034527 1,2-dihydroxy-8-carboxynaphthalene dioxygenase activity
GO:0034529 2-hydroxy-3-carboxy-benzalpyruvate hydratase-aldolase activity
GO:0034531 2-hydroxy-4-hydroxymethylbenzalpyruvate hydratase-aldolase activity
GO:0034533 1,2-dihydroxy-7-hydroxymethylnaphthalene dioxygenase activity
GO:0034535 1,2-dihydroxy-8-methylnaphthalene dioxygenase activity
GO:0034537 2-hydroxy-3-methylbenzalpyruvate hydratase-aldolase activity
GO:0034538 3-methylsalicylaldehyde dehydrogenase activity
GO:0034541 dimethylarsinite methyltransferase activity
GO:0034558 technetium (VII) reductase activity
GO:0034559 bisphenol A hydroxylase B activity
GO:0034561 1,2-bis(4-hydroxyphenyl)-2-proponol dehydratase activity
GO:0034562 2,2-bis(4-hydroxyphenyl)-1-propanol hydroxylase activity
GO:0034563 2,3-bis(4-hydroxyphenyl)-1,2-propanediol dioxygenase activity
GO:0034564 4,4'-dihydroxy-alpha-methylstilbene dioxygenase activity
GO:0034571 4'-(2-hydroxyisopropyl)phenylurea amidohydrolase activity
GO:0034573 didemethylisoproturon amidohydrolase activity
GO:0034576 N-isopropylacetanilide amidohydrolase activity
GO:0034578 limonene 8-hydratase activity
GO:0034579 (1-methylpentyl)succinate synthase activity
GO:0034581 4-methyloct-2-enoyl-CoA hydratase activity
GO:0034582 3-hydroxy-4-methyloctanoyl-CoA dehydrogenase activity
GO:0034778 2-hydroxy-4-isopropenylcyclohexane-1-carboxyl-CoA dehydrogenase activity
GO:0034779 4-isopropenyl-2-ketocyclohexane-1-carboxyl-CoA hydrolase activity
GO:0034780 glyphosate dehydrogenase activity
GO:0034781 N-cyclohexylformamide amidohydrolase activity
GO:0034782 dimethylmalonate decarboxylase activity
GO:0034783 pivalate-CoA ligase activity
GO:0034786 9-fluorenone-3,4-dioxygenase activity
GO:0034787 1-hydro-1,1a-dihydroxy-9-fluorenone dehydrogenase activity
GO:0034788 2,3-dihydroxy-2'-carboxybiphenyl 1,2-dioxygenase activity
GO:0034789 2-hydroxy-6-oxo-6-(2-carboxyphenyl)-hexa-2,4-dienoate hydrolase activity
GO:0034790 3,4-dihydroxy-3,4-dihydrofluorene dehydrogenase activity
GO:0034792 hypophosphite dioxygenase activity
GO:0034793 cyclopropanecarboxylate-CoA ligase activity
GO:0034796 adipate-CoA ligase activity
GO:0034797 fosfomycin 2-glutathione ligase activity
GO:0034798 fosfomycin 2-L-cysteine ligase activity
GO:0034799 dihydride TNP tautomerase activity
GO:0034801 2,4-dinitrocyclohexanone hydrolase activity
GO:0034804 benzo(a)pyrene 11,12-epoxidase activity
GO:0034805 benzo(a)pyrene-trans-11,12-dihydrodiol dehydrogenase activity
GO:0034807 4,5-dihydroxybenzo(a)pyrene methyltransferase activity
GO:0034809 benzo(a)pyrene-cis-4,5-dihydrodiol dehydrogenase activity
GO:0034816 anthracene 9,10-dioxygenase activity
GO:0034817 cis-9,10-dihydroanthracene-9,10-diol dehydrogenase activity
GO:0034821 citronellol dehydrogenase activity
GO:0034822 citronellal dehydrogenase activity
GO:0034826 1,2-dihydroxy-1,2,5,6,7,8-hexyhadronaphthalene dehydrogenase activity
GO:0034828 4-(2-oxocyclohexyl)-2-hydroxy-buta-2,4-dienoate hydrolase activity
GO:0034829 2-hydroxydec-2,4-diene-1,10-dioate hydratase activity
GO:0034831 (R)-(-)-1,2,3,4-tetrahydronaphthol dehydrogenase activity
GO:0034833 geranylate CoA-transferase activity
GO:0034837 2-mercaptobenzothiazole-cis-6,7-dihydrodiol dehydrogenase activity
GO:0034838 menthone dehydrogenase activity
GO:0034839 menth-2-enone hydratase activity
GO:0034840 3-hydroxymenthone dehydrogenase activity
GO:0034841 mentha-1,3-dione-CoA ligase activity
GO:0034842 thiophene-2-carboxylate-CoA ligase activity
GO:0034843 2-oxoglutaryl-CoA thioesterase activity
GO:0034844 naphthyl-2-methyl-succinate CoA-transferase activity
GO:0034846 naphthyl-2-methylene-succinyl-CoA lyase activity
GO:0034847 naphthyl-2-hydroxymethyl-succinyl-CoA dehydrogenase activity
GO:0034848 naphthyl-2-oxomethyl-succinyl-CoA succinyl transferase activity
GO:0034849 2-naphthoate CoA-transferase activity
GO:0034851 2,4,4-trimethyl-3-oxopentanoyl-CoA 2-C-propanoyl transferase activity
GO:0034852 4,4-dimethyl-3-oxopentanal dehydrogenase activity
GO:0034853 2,4,4-trimethyl-3-oxopentanoate decarboxylase activity
GO:0034854 4,4-dimethyl-3-oxopentanoate decarboxylase activity
GO:0034857 2-(methylthio)benzothiazole monooxygenase activity
GO:0034858 2-hydroxybenzothiazole monooxygenase activity
GO:0034859 benzothiazole monooxygenase activity
GO:0034862 2,6-dihydroxybenzothiazole monooxygenase activity
GO:0034863 2,4,4-trimethyl-1-pentanol dehydrogenase activity
GO:0034864 2,4,4-trimethylpentanal dehydrogenase activity
GO:0034865 2,4,4-trimethylpentanoate-CoA ligase activity
GO:0034866 2,4,4-trimethylpentanoyl-CoA dehydrogenase activity
GO:0034867 2,4,4-trimethylpent-2-enoyl-CoA hydratase activity
GO:0034868 2,4,4-trimethyl-3-hydroxypentanoyl-CoA dehydrogenase activity
GO:0034869 2,4,4-trimethyl-3-oxopentanoyl-CoA thioesterase activity
GO:0034870 pinacolone 5-monooxygenase activity
GO:0034871 1-hydroxy-4,4-dimethylpentan-3-one dehydrogenase activity
GO:0034873 thioacetamide S-oxygenase activity
GO:0034874 thioacetamide S-oxide S-oxygenase activity
GO:0034876 isonicotinic acid hydrazide hydrolase activity
GO:0034877 isonicotinate dehydrogenase activity
GO:0034878 2-hydroxyisonicotinate dehydrogenase activity
GO:0034879 2,3,6-trihydroxyisonicotinate decarboxylase activity
GO:0034880 citrazinate dehydrogenase activity
GO:0034881 citrazinate hydrolase activity
GO:0034882 cis-aconitamide amidase activity
GO:0034885 gamma-N-formylaminovinylacetate hydrolase activity
GO:0034888 endosulfan monooxygenase I activity
GO:0034889 endosulfan hemisulfate sulfatase activity
GO:0034890 endosulfan diol hydrolyase (cyclizing) activity
GO:0034891 endosulfan diol dehydrogenase activity
GO:0034892 endosulfan lactone lactonase activity
GO:0034893 N-nitrodimethylamine hydroxylase activity
GO:0034897 4-(1-ethyl-1,4-dimethyl-pentyl)phenol monooxygenase activity
GO:0034901 endosulfan hydroxyether dehydrogenase activity
GO:0034902 endosulfan sulfate hydrolase activity
GO:0034903 endosulfan ether monooxygenase activity
GO:0034904 5-chloro-2-oxopent-4-enoate hydratase activity
GO:0034910 6-hydroxy-3-succinoylpyridine hydrolase activity
GO:0034917 2-methylhex-2-enoyl-CoA hydratase activity
GO:0034918 3-hydroxy-2-methylhexanoyl-CoA dehydrogenase activity
GO:0034919 butyryl-CoA 2-C-propionyltransferase activity
GO:0034921 cis-4,5-dihydroxy-4,5-dihydropyrene dehydrogenase activity
GO:0034923 phenanthrene-4,5-dicarboxylate decarboxylase activity
GO:0034924 cis-3,4-phenanthrenedihydrodiol-4-carboxylate dehydrogenase activity
GO:0034925 pyrene 4,5-monooxygenase activity
GO:0034926 pyrene-4,5-epoxide hydrolase activity
GO:0034927 pyrene 1,2-monooxygenase activity
GO:0034928 1-hydroxypyrene 6,7-monooxygenase activity
GO:0034929 1-hydroxypyrene 7,8-monooxygenase activity
GO:0034931 1-hydroxypyrene methyltransferase activity
GO:0034932 1-methoxypyrene 6,7-monooxygenase activity
GO:0034933 1-hydroxy-6-methoxypyrene methyltransferase activity
GO:0034939 5-hydroxypyrrole-2-carboxylate tautomerase activity
GO:0034940 5-oxo-4,5-dihydropyrrole-2-carboxylate amidase activity
GO:0034942 cis-2-methyl-5-isopropylhexa-2,5-dienoate-CoA ligase activity
GO:0034943 trans-2-methyl-5-isopropylhexa-2,5-dienoate-CoA ligase activity
GO:0034944 3-hydroxy-2,6-dimethyl-5-methylene-heptanoyl-CoA dehydrogenase activity
GO:0034946 3-isopropylbut-3-enoyl-CoA thioesterase activity
GO:0034947 terephthalate decarboxylase activity
GO:0034950 phenylboronic acid monooxygenase activity
GO:0034952 malonate semialdehyde decarboxylase activity
GO:0034953 perillyl-CoA hydratase activity
GO:0034957 3-nitrophenol nitroreductase activity
pgaudet commented 3 months ago

In fact some of these terms had annotations.

Unobsoleted the following terms until we can sort out whether we want to keep them or not:

Thanks