search

geneontology / go-ontology

Source ontology files for the Gene Ontology
http://geneontology.org/page/download-ontology
Creative Commons Attribution 4.0 International
219 stars 40 forks source link

add check for source annotation property on xref axioms #28417

Open balhoff opened 2 months ago

balhoff commented 2 months ago

xrefs axioms should only be annotated with oio:source and skos values.

Related to #28404.

sjm41 commented 1 month ago

FYI, I see 4 such examples of this error in the current ontology:

id: GO:0004764 name: shikimate 3-dehydrogenase (NADP+) activity xref: EC:1.1.1.282 {comment="skos:broadMatch"} (I'm fixing this one as part of #28514)

id: GO:0018423 name: protein C-terminal leucine carboxyl O-methyltransferase activity xref: RHEA:48544 {comment="skos:narrowMatch"}

id: GO:0047224 name: acetylgalactosaminyl-O-glycosyl-glycoprotein beta-1,3-N-acetylglucosaminyltransferase activity xref: RHEA:46884 {comment="skos:narrowMatch"}

id: GO:0051698 name: saccharopine oxidase activity xref: RHEA:28210 {comment="skos:exactMatch"}

pgaudet commented 1 month ago

I fixed the 4 problematix xref types.