geneontology / go-ontology

Source ontology files for the Gene Ontology
http://geneontology.org/page/download-ontology
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syn: collection of synonyms #2879

Closed gocentral closed 9 years ago

gocentral commented 19 years ago

NACA -> GO:0005854 nascent polypeptide-associated complex

nuclear morphology -> GO:0006997 nuclear organization and biogenesis (not sure but this appears to be what they mean)

N-terminal acetyltransferase NatA-> GO:0031415 NatA complex

Nat-B N-acetyltransferase natB -> GO:0031416 NatB complex

CAK -> GO:0019912 cyclin-dependent protein kinase activating kinase activity

CSN -> GO:0008180 signalosome complex

G2/M checkpoint -> Mitotic G2 checkpoint ?

ARS binding (related) -> DNA replication origin binding

coenzynme Q biosynthesis ->ubiquinone biosynthesis

coenzynme Q6 biosynthesis ->ubiquinone biosynthesis

(in fact add coenzyme Q to all ubiquinone terms)

septum positioning -> GO:0000918

mRNA stabilization -> mRNA stability

Rad50 complex -> Mre11 complex

Rad50-Rad32-nbs1 complex -> Mre11 complex

MAPK cascade -> MAPKKK cascade

NER -> nucletide-excision repair (by the way nucletide-excision repair is hyphenated but child pyrimidine dimer repair via nucleotide excision repair isn't...the complexes aren't but I think this is intentional?

MMR -> mismatch repair

Mad2-dependent checkpoint -> mitotic spindle checkpoint GO:0007094

Reported by: ValWood

Original Ticket: "geneontology/ontology-requests/2888":https://sourceforge.net/p/geneontology/ontology-requests/2888

gocentral commented 19 years ago

Logged In: YES user_id=516865

and some more....

mRNA processing /mRNA maturation?

Golgi transport complex GO:0017119 add Sec34/35 complex COG complex conserved oligomeric Golgi complex

RNA cleavage and polyadenylation specificity factor complex GO:0005847 add CFII component

DNA replication factor A complex add single-stranded DNA-binding protein complex (SSB)

maltose catabolism add maltose hydrolysis ?

UDP-N-acetylglucosamine biosynthesis UDP-GLCNAC biosynthesis? not sure about this one?

thats it. these are all things I have searched for.....

ribonucleoside-diphosphate reductase complex RNR complex ribonucleotide reductase complex (TAS PMID: 15805471)

Original comment by: ValWood

gocentral commented 19 years ago

Original comment by: mah11

gocentral commented 19 years ago

Logged In: YES user_id=436423

added synonyms (mostly exact, some other scopes) except:

> CSN -> GO:0008180 signalosome complex already there

> G2/M checkpoint -> Mitotic G2 checkpoint ? added synonym to parent GO:0031576 instead

> (in fact add coenzyme Q to all ubiquinone terms) most already had 'em

> mRNA stabilization -> mRNA stability really necessary? parent is 'regulation of mRNA stability'

> MAPK cascade -> MAPKKK cascade already there

also ... > maltose catabolism add maltose hydrolysis ? added as narrow synonym

> UDP-N-acetylglucosamine biosynthesis > UDP-GLCNAC biosynthesis? not sure about this one? yep, corrected case to UDP-GlcNAc

Original comment by: mah11

gocentral commented 19 years ago

Original comment by: mah11

gocentral commented 19 years ago

Logged In: YES user_id=516865

> mRNA stabilization -> mRNA stability really necessary? parent is 'regulation of mRNA stability'

OK probably not, I hadn't spotted that, oddly....

Original comment by: ValWood