Obsoletion request: trehalose biosynthesis in response to heat stress (GO:0090441)

[sjm41]

Please provide as much information as you can:

• GO term ID and Label trehalose biosynthesis in response to heat stress (GO:0090441)

• Reason for deprecation Put an x in the appropriate box:

  • [x] The reason for obsoletion is that this term is pre-composed and should be represented as a GO-CAM model.
  • [x] The reason for obsoletion is that there is no evidence that this function/process/component exists.

• "Replace by" term (ID and label) n/a

• "Consider" term(s) (ID and label) GO:0005992 trehalose biosynthetic process (parent term)?

• Are there annotations to this term?

• How many EXP: 0

• Are there mappings and cross references to this term? (InterPro, Keywords; check QuickGO cross-references section) No

• Is this term in a subset? (check the AmiGO page for that term) No

• Any other information 0 annotations (EXP or NON-EXP)

---

Checklist for ontology editor

Check term usage and metadata in Protégé

• [ ] check term usage in the ontology
• [ ] check internal mappings: RHEA, EC, MetaCyc
• [ ] check subset usage
• [ ] check taxon constraints

Check annotations

• [ ] create Annotation Review spreadsheet
• • Annotation Review template: https://docs.google.com/spreadsheets/d/1izV3q1jnq_Ybg5MJ53O_b5BCTkGtjl_Fi-cOg3-7eBE/edit#gid=0
• • Instructions: https://wiki.geneontology.org/Annotation_Review_Request
• [ ] create annotation review ticket: https://github.com/geneontology/go-annotation/issues/new?assignees=&labels=annotation+review&template=annotation-review-for-obsoletion.md&title=Review+annotations+to+%5BINSERT+GO+TERM%5D
• [ ] find external mappings (via IEAS), include in obsoletion notice
• [ ] tag curators in Annotation Review ticket. Responsible annotator for each group: https://github.com/geneontology/go-site/blob/master/metadata/group-contacts.csv

Notification

• [ ] create obsoletion announcement
• [ ] announce to GO friends (go-friends@mailman.stanford.edu)
• [ ] paste the text in the ontology ticket

[sjm41]

This is more complicated than I first realised. There's a small hierarchy involved here:

trehalose metabolism in response to stress (200 direct annotations, 2 EXP)
           |__trehalose metabolism in response to cold stress (4 annotations)
           |__trehalose metabolism in response to heat stress (12 annotations, 2 EXP)
               |__trehalose biosynthesis in response to heat stress (0 annotations)
               |__trehalose catabolism in response to heat stress (0 annotations)
           |__trehalose metabolism in response to water deprivation (0 annotations)