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geneontology / go-ontology

Source ontology files for the Gene Ontology
http://geneontology.org/page/download-ontology
Creative Commons Attribution 4.0 International
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Add check for definition xrefs that are not also term xrefs #29161

Open balhoff opened 2 weeks ago

balhoff commented 2 weeks ago

Google spreadsheet: https://docs.google.com/spreadsheets/d/1jMfBoiSRrT-Ycx6TEA9laLDLL9Tj1cFqp9V9WX3mcyk/edit?gid=0#gid=0

Fixes #28523.

In order to be merged, these all need to be checked. @pgaudet is there anything I can do to automate this?

github-actions[bot] commented 2 weeks ago

Here's a diff of how these changes impact the classified ontology:

Ontologies are identical

balhoff commented 2 weeks ago

@pgaudet I tried automatically copying these def xrefs to term xrefs, but there were a large number of one-to-one mapping violations in QC. So I decided to leave the list as is rather than creating additional changes to manage.