fixed labels for #29194

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Here's a diff of how these changes impact the classified ontology:

Ontology comparison

Left

• Ontology IRI: http://purl.obolibrary.org/obo/go.owl
• Version IRI: http://purl.obolibrary.org/obo/go/releases/2024-11-12/go.owl
• Loaded from: file:/__w/go-ontology/go-ontology/src/ontology/../../reasoned-master.owl/reasoned.owl

Right

• Ontology IRI: http://purl.obolibrary.org/obo/go.owl
• Version IRI: http://purl.obolibrary.org/obo/go/releases/2024-11-12/go.owl
• Loaded from: file:/__w/go-ontology/go-ontology/src/ontology/../../reasoned-pr.owl/reasoned.owl

Ontology imports

Ontology annotations

degradation of host chromosome by virus http://purl.obolibrary.org/obo/GO_0099015

Removed

• degradation of host chromosome by virus SubClassOf obsolete catabolism by virus of host DNA

Added

• degradation of host chromosome by virus SubClassOf viral process

• degradation of host chromosome by virus SubClassOf part of some viral DNA genome replication

evasion by virus of host natural killer cell activity http://purl.obolibrary.org/obo/GO_0039671

Added

• evasion by virus of host natural killer cell activity database_cross_reference "VZ:878"

modulation of nutrient release by host http://purl.obolibrary.org/obo/GO_0052091

Removed

• modulation of nutrient release by host SubClassOf part of some acquisition of nutrients from host

• modulation of nutrient release by host SubClassOf symbiont-mediated perturbation of host process

Added

• modulation of nutrient release by host SubClassOf acquisition of nutrients from host

obsolete catabolism by virus of host DNA http://purl.obolibrary.org/obo/GO_0039637

Removed

• obsolete catabolism by virus of host DNA label "catabolism by virus of host DNA"

• obsolete catabolism by virus of host DNA definition "The breakdown of host DNA, deoxyribonucleic acid, by a virus."

  • database_cross_reference "GOC:jl"

  • database_cross_reference "GOC:bf"

  • database_cross_reference "GOC:bm"

• obsolete catabolism by virus of host DNA SubClassOf modulation by virus of host process

Added

• obsolete catabolism by virus of host DNA definition "OBSOLETE. The breakdown of host DNA, deoxyribonucleic acid, by a virus."

  • database_cross_reference "GOC:jl"

  • database_cross_reference "GOC:bf"

  • database_cross_reference "GOC:bm"

• obsolete catabolism by virus of host DNA comment "This term was obsoleted because it was an unnecessary grouping class."

• obsolete catabolism by virus of host DNA label "obsolete catabolism by virus of host DNA"

• obsolete catabolism by virus of host DNA deprecated true

• obsolete catabolism by virus of host DNA term tracker item "https://github.com/geneontology/go-ontology/issues/26621"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI)

obsolete modulation by virus of host autophagy http://purl.obolibrary.org/obo/GO_0039519

Removed

• obsolete modulation by virus of host autophagy definition "Any process in which a virus effect a change in the frequency, rate or extent of autophagy in the host."

  • database_cross_reference "GOC:bf"

  • database_cross_reference "GOC:sp"

• obsolete modulation by virus of host autophagy label "modulation by virus of host autophagy"

• obsolete modulation by virus of host autophagy SubClassOf modulation by virus of host cellular process

Added

• obsolete modulation by virus of host autophagy label "obsolete modulation by virus of host autophagy"

• obsolete modulation by virus of host autophagy deprecated true

• obsolete modulation by virus of host autophagy term tracker item "https://github.com/geneontology/go-ontology/issues/26621"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI)

• obsolete modulation by virus of host autophagy comment "This term was osboleted because it represents the same process as symbiont-mediated perturbation of host autophagy ; GO:0075071."

• obsolete modulation by virus of host autophagy term replaced by "GO:0075071"

• obsolete modulation by virus of host autophagy definition "OBSOLETE. Any process in which a virus effect a change in the frequency, rate or extent of autophagy in the host."

  • database_cross_reference "GOC:bf"

  • database_cross_reference "GOC:sp"

obsolete modulation by virus of host cytokine production http://purl.obolibrary.org/obo/GO_0044831

Removed

• obsolete modulation by virus of host cytokine production label "modulation by virus of host cytokine production"

• obsolete modulation by virus of host cytokine production definition "Any process in which a virus modulates the frequency, rate or extent of cytokine production in its host organism."

  • database_cross_reference "GOC:jl"

• obsolete modulation by virus of host cytokine production EquivalentTo perturbation by virus of host immune response and (regulates in another organism some cytokine production)

• obsolete modulation by virus of host cytokine production SubClassOf symbiont-mediated perturbation of host gene expression

• obsolete modulation by virus of host cytokine production SubClassOf regulates in another organism some cytokine production

• obsolete modulation by virus of host cytokine production SubClassOf perturbation by virus of host immune response

Added

• obsolete modulation by virus of host cytokine production term tracker item "https://github.com/geneontology/go-ontology/issues/29194"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI)

• obsolete modulation by virus of host cytokine production label "obsolete modulation by virus of host cytokine production"

• obsolete modulation by virus of host cytokine production deprecated true

• obsolete modulation by virus of host cytokine production comment "This term was obsoleted because it is an unnecessary grouping term."

• obsolete modulation by virus of host cytokine production definition "OBSOLETE. Any process in which a virus modulates the frequency, rate or extent of cytokine production in its host organism."

  • database_cross_reference "GOC:jl"

obsolete modulation by virus of host cytoplasmic transport http://purl.obolibrary.org/obo/GO_1903652

Removed

• obsolete modulation by virus of host cytoplasmic transport label "modulation by virus of host cytoplasmic transport"

• obsolete modulation by virus of host cytoplasmic transport definition "Modulation by an infecting virus of host cytoplasmic transport."

  • database_cross_reference "GOC:TermGenie"

  • database_cross_reference "PMID:25049409"

  • database_cross_reference "GO_REF:0000063"

• obsolete modulation by virus of host cytoplasmic transport SubClassOf modulation by virus of host cellular process

Added

• obsolete modulation by virus of host cytoplasmic transport term tracker item "https://github.com/geneontology/go-ontology/issues/26621"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI)

• obsolete modulation by virus of host cytoplasmic transport definition "OBSOLETE. Modulation by an infecting virus of host cytoplasmic transport."

  • database_cross_reference "GOC:TermGenie"

  • database_cross_reference "PMID:25049409"

  • database_cross_reference "GO_REF:0000063"

• obsolete modulation by virus of host cytoplasmic transport deprecated true

• obsolete modulation by virus of host cytoplasmic transport comment "This term was obsoleted because it represents the same process as symbiont-mediated perturbation of host intracellular transport ; GO:0052038."

• obsolete modulation by virus of host cytoplasmic transport term replaced by "GO:0052038"

• obsolete modulation by virus of host cytoplasmic transport label "obsolete modulation by virus of host cytoplasmic transport"

obsolete modulation by virus of host protein transport http://purl.obolibrary.org/obo/GO_0044833

Removed

• obsolete modulation by virus of host protein transport definition "Any viral process that modulates the frequency, rate or extent of protein transport in its host organism."

  • database_cross_reference "GOC:jl"

  • database_cross_reference "PMID:22334672"

• obsolete modulation by virus of host protein transport label "modulation by virus of host protein transport"

• obsolete modulation by virus of host protein transport EquivalentTo symbiont-mediated perturbation of host process and (regulates in another organism some protein transport)

• obsolete modulation by virus of host protein transport SubClassOf symbiont-mediated perturbation of host cellular process

• obsolete modulation by virus of host protein transport SubClassOf regulates in another organism some protein transport

Added

• obsolete modulation by virus of host protein transport term tracker item "https://github.com/geneontology/go-ontology/issues/26621"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI)

• obsolete modulation by virus of host protein transport comment "This term was obsoleted because its definition was too vague."

• obsolete modulation by virus of host protein transport definition "OBSOLETE. Any viral process that modulates the frequency, rate or extent of protein transport in its host organism."

  • database_cross_reference "GOC:jl"

  • database_cross_reference "PMID:22334672"

• obsolete modulation by virus of host protein transport label "obsolete modulation by virus of host protein transport"

• obsolete modulation by virus of host protein transport deprecated true

obsolete suppression by virus of host autophagy http://purl.obolibrary.org/obo/GO_0039521

Removed

• obsolete suppression by virus of host autophagy definition "Any process in which a virus stops, prevents, or reduces the frequency, rate or extent of autophagy in the host."

  • database_cross_reference "GOC:bf"

  • database_cross_reference "VZ:845"

  • database_cross_reference "UniProtKB-KW:KW-1083"

  • database_cross_reference "GOC:sp"

• obsolete suppression by virus of host autophagy label "suppression by virus of host autophagy"

• obsolete suppression by virus of host autophagy has_exact_synonym "inhibition of host autophagy by virus"

  • database_cross_reference "UniProtKB-KW:KW-1083"

• obsolete suppression by virus of host autophagy SubClassOf obsolete modulation by virus of host autophagy

Added

• obsolete suppression by virus of host autophagy deprecated true

• obsolete suppression by virus of host autophagy term tracker item "https://github.com/geneontology/go-ontology/issues/26621"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI)

• obsolete suppression by virus of host autophagy term replaced by "GO:0140321"

• obsolete suppression by virus of host autophagy comment "This term was obsoleted because it represents the same process as symbiont-mediated suppression of host autophagy ; GO:0140321."

• obsolete suppression by virus of host autophagy label "obsolete suppression by virus of host autophagy"

• obsolete suppression by virus of host autophagy definition "OBSOLETE. Any process in which a virus stops, prevents, or reduces the frequency, rate or extent of autophagy in the host."

  • database_cross_reference "GOC:bf"

  • database_cross_reference "GOC:sp"

obsolete translocation of DNA into host http://purl.obolibrary.org/obo/GO_0044418

Removed

• obsolete translocation of DNA into host definition "The directed movement of DNA from an organism to a location inside its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction."

  • database_cross_reference "GOC:cc"

• obsolete translocation of DNA into host label "translocation of DNA into host"

• obsolete translocation of DNA into host SubClassOf translocation of molecules into host

Added

• obsolete translocation of DNA into host consider "GO:0075508"

• obsolete translocation of DNA into host definition "OBSOLETE. The directed movement of DNA from an organism to a location inside its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction."

  • database_cross_reference "GOC:cc"

• obsolete translocation of DNA into host consider "GO:0075506"

• obsolete translocation of DNA into host term tracker item "https://github.com/geneontology/go-ontology/issues/26621"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI)

• obsolete translocation of DNA into host label "obsolete translocation of DNA into host"

• obsolete translocation of DNA into host consider "GO:0075507"

• obsolete translocation of DNA into host deprecated true

• obsolete translocation of DNA into host comment "This term was obsoleted because it was redundant with other terms."

reorganization of cellular membranes to establish viral sites of replication http://purl.obolibrary.org/obo/GO_0140754

Removed

• reorganization of cellular membranes to establish viral sites of replication SubClassOf biological process involved in interaction with symbiont

Added

• reorganization of cellular membranes to establish viral sites of replication SubClassOf symbiont-mediated perturbation of host membrane

reorganization of host cellular membranes to establish sites of replication http://purl.obolibrary.org/obo/GO_0140755

Removed

• reorganization of host cellular membranes to establish sites of replication SubClassOf modulation by virus of host cellular process

Added

• reorganization of host cellular membranes to establish sites of replication SubClassOf symbiont-mediated perturbation of host membrane

• reorganization of host cellular membranes to establish sites of replication SubClassOf viral process

suppression by virus of host cytokine production http://purl.obolibrary.org/obo/GO_0046775

Removed

• suppression by virus of host cytokine production EquivalentTo perturbation by virus of host immune response and (negatively regulates in another organism some cytokine production)

• suppression by virus of host cytokine production SubClassOf symbiont-mediated suppression of host gene expression

• suppression by virus of host cytokine production SubClassOf negatively regulates in another organism some cytokine production

• suppression by virus of host cytokine production SubClassOf obsolete modulation by virus of host cytokine production

symbiont-mediated suppression of host cell wall biogenesis http://purl.obolibrary.org/obo/GO_0039636

Removed

• symbiont-mediated suppression of host cell wall biogenesis label "suppression by virus of host cell wall biogenesis"

• symbiont-mediated suppression of host cell wall biogenesis SubClassOf modulation by virus of host cellular process

Added

• symbiont-mediated suppression of host cell wall biogenesis label "symbiont-mediated suppression of host cell wall biogenesis"

• symbiont-mediated suppression of host cell wall biogenesis has_narrow_synonym "suppression by virus of host cell wall biogenesis"

• symbiont-mediated suppression of host cell wall biogenesis EquivalentTo symbiont-mediated perturbation of host process and (negatively regulates in another organism some cell wall biogenesis)

• symbiont-mediated suppression of host cell wall biogenesis SubClassOf symbiont-mediated perturbation of host process

• symbiont-mediated suppression of host cell wall biogenesis SubClassOf negatively regulates in another organism some cell wall biogenesis

symbiont-mediated suppression of host mRNA export from nucleus http://purl.obolibrary.org/obo/GO_0039522

Removed

• symbiont-mediated suppression of host mRNA export from nucleus definition "A process in which a symbiont inhibits or disrupts the normal movement of mRNA from the nucleus to the cytoplasm of the host cell, leading to shutoff of host protein expression. The host is defined as the larger of the organisms involved in a symbiotic interaction."

  • database_cross_reference "GOC:bf"

  • database_cross_reference "GOC:sp"

Added

• symbiont-mediated suppression of host mRNA export from nucleus definition "A process in which a symbiont inhibits or disrupts the normal movement of mRNA from the nucleus to the cytoplasm of the host cell, leading to shutoff of host protein expression. The host is defined as the larger of the organisms involved in a symbiotic interaction."

  • database_cross_reference "GOC:bf"

  • database_cross_reference "PMID:22334672"

  • database_cross_reference "GOC:sp"

symbiont-mediated suppression of host natural killer cell activation http://purl.obolibrary.org/obo/GO_0039672

Removed

• symbiont-mediated suppression of host natural killer cell activation definition "Any process in which a virus stops, prevents, or reduces the frequency, rate or extent of natural killer cell activation in the host."

  • database_cross_reference "GOC:jl"

  • database_cross_reference "GOC:bf"

• symbiont-mediated suppression of host natural killer cell activation has_exact_synonym "suppression by virus of host NK-cell activation"

  • database_cross_reference "GOC:jl"

  • database_cross_reference "GOC:bf"

• symbiont-mediated suppression of host natural killer cell activation label "suppression by virus of host natural killer cell activation"

• symbiont-mediated suppression of host natural killer cell activation SubClassOf evasion by virus of host natural killer cell activity

Added

• symbiont-mediated suppression of host natural killer cell activation label "symbiont-mediated suppression of host natural killer cell activation"

• symbiont-mediated suppression of host natural killer cell activation definition "A process in which a symbiont interferes with, inhibits or disrupts natural killer cell activation in the host. The host is defined as the larger of the organisms involved in a symbiotic interaction."

  • database_cross_reference "PMID:10799855"

• symbiont-mediated suppression of host natural killer cell activation term tracker item "https://github.com/geneontology/go-ontology/issues/26621"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI)

• symbiont-mediated suppression of host natural killer cell activation has_exact_synonym "suppression by virus of host NK-cell activation"

• symbiont-mediated suppression of host natural killer cell activation has_narrow_synonym "suppression by virus of host natural killer cell activation"

• symbiont-mediated suppression of host natural killer cell activation SubClassOf symbiont-mediated perturbation of host process

symbiont-mediated suppression of host peptidoglycan biosynthetic process http://purl.obolibrary.org/obo/GO_0039635

Removed

• symbiont-mediated suppression of host peptidoglycan biosynthetic process label "suppression by virus of host peptidoglycan biosynthetic process"

• symbiont-mediated suppression of host peptidoglycan biosynthetic process SubClassOf symbiont-mediated suppression of host cell wall biogenesis

Added

• symbiont-mediated suppression of host peptidoglycan biosynthetic process label "symbiont-mediated suppression of host peptidoglycan biosynthetic process"

• symbiont-mediated suppression of host peptidoglycan biosynthetic process has_narrow_synonym "suppression by virus of host peptidoglycan biosynthetic process"

• symbiont-mediated suppression of host peptidoglycan biosynthetic process EquivalentTo symbiont-mediated perturbation of host process and (negatively regulates in another organism some peptidoglycan biosynthetic process)

• symbiont-mediated suppression of host peptidoglycan biosynthetic process SubClassOf negatively regulates in another organism some peptidoglycan biosynthetic process

• symbiont-mediated suppression of host peptidoglycan biosynthetic process SubClassOf symbiont-mediated perturbation of host process

viral mRNA export from host cell nucleus http://purl.obolibrary.org/obo/GO_0046784

Removed

• viral mRNA export from host cell nucleus SubClassOf translocation of molecules into host

Added

• viral mRNA export from host cell nucleus SubClassOf part of some viral gene expression

• viral mRNA export from host cell nucleus SubClassOf viral process