Closed pgaudet closed 1 week ago
Here's a diff of how these changes impact the classified ontology:
http://purl.obolibrary.org/obo/go.owl
http://purl.obolibrary.org/obo/go/releases/2024-11-13/go.owl
file:/__w/go-ontology/go-ontology/src/ontology/../../reasoned-master.owl/reasoned.owl
file:/__w/go-ontology/go-ontology/src/ontology/../../reasoned-pr.owl/reasoned.owl
http://purl.obolibrary.org/obo/GO_0046597
http://purl.obolibrary.org/obo/GO_0052422
obsolete modulation by host of symbiont catalytic activity label "modulation by host of symbiont catalytic activity"
obsolete modulation by host of symbiont catalytic activity definition "The process in which a host organism effects a change in the enzyme activity of its symbiont organism."
database_cross_reference "GOC:tb"
database_cross_reference "GOC:mtg_pamgo_17jul06"
obsolete modulation by host of symbiont catalytic activity SubClassOf modulation by host of symbiont process
obsolete modulation by host of symbiont catalytic activity deprecated true
obsolete modulation by host of symbiont catalytic activity definition "OBSOLETE. The process in which a host organism effects a change in the enzyme activity of its symbiont organism."
obsolete modulation by host of symbiont catalytic activity comment "This term was obsoleted because it represents a molecular function."
obsolete modulation by host of symbiont catalytic activity label "obsolete modulation by host of symbiont catalytic activity"
obsolete modulation by host of symbiont catalytic activity term tracker item "https://github.com/geneontology/go-ontology/issues/29205"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI)
http://purl.obolibrary.org/obo/GO_1990969
obsolete modulation by host of viral RNA-binding transcription factor activity definition "A process in which a host organism modulates the frequency, rate or extent of the activity of a viral RNA-binding transcription factor."
database_cross_reference "GOC:bf"
database_cross_reference "GOC:PARL"
database_cross_reference "PMID:25116364"
obsolete modulation by host of viral RNA-binding transcription factor activity label "modulation by host of viral RNA-binding transcription factor activity"
obsolete modulation by host of viral RNA-binding transcription factor activity EquivalentTo obsolete modulation by host of symbiont catalytic activity and (regulates some RNA-binding transcription regulator activity)
obsolete modulation by host of viral RNA-binding transcription factor activity SubClassOf obsolete modulation by host of symbiont catalytic activity
obsolete modulation by host of viral RNA-binding transcription factor activity SubClassOf regulates some RNA-binding transcription regulator activity
obsolete modulation by host of viral RNA-binding transcription factor activity SubClassOf modulation by host of viral transcription
obsolete modulation by host of viral RNA-binding transcription factor activity label "obsolete modulation by host of viral RNA-binding transcription factor activity"
obsolete modulation by host of viral RNA-binding transcription factor activity comment "This term was obsoleted because it represents a molecular function."
obsolete modulation by host of viral RNA-binding transcription factor activity deprecated true
obsolete modulation by host of viral RNA-binding transcription factor activity definition "OBSOLETE. A process in which a host organism modulates the frequency, rate or extent of the activity of a viral RNA-binding transcription factor."
obsolete modulation by host of viral RNA-binding transcription factor activity term tracker item "https://github.com/geneontology/go-ontology/issues/29205"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI)
http://purl.obolibrary.org/obo/GO_0052403
obsolete negative regulation by host of symbiont catalytic activity definition "Any process in which an organism stops, prevents, or reduces the frequency, rate or extent of symbiont enzyme activity. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction."
obsolete negative regulation by host of symbiont catalytic activity label "negative regulation by host of symbiont catalytic activity"
obsolete negative regulation by host of symbiont catalytic activity EquivalentTo obsolete modulation by host of symbiont catalytic activity and (negatively regulates some catalytic activity)
obsolete negative regulation by host of symbiont catalytic activity SubClassOf negatively regulates some catalytic activity
obsolete negative regulation by host of symbiont catalytic activity SubClassOf obsolete modulation by host of symbiont catalytic activity
obsolete negative regulation by host of symbiont catalytic activity definition "OBSOLETE. Any process in which an organism stops, prevents, or reduces the frequency, rate or extent of symbiont enzyme activity. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction."
obsolete negative regulation by host of symbiont catalytic activity term tracker item "https://github.com/geneontology/go-ontology/issues/29205"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI)
obsolete negative regulation by host of symbiont catalytic activity comment "This term was obsoleted because it represents a molecular function."
obsolete negative regulation by host of symbiont catalytic activity label "obsolete negative regulation by host of symbiont catalytic activity"
obsolete negative regulation by host of symbiont catalytic activity deprecated true
http://purl.obolibrary.org/obo/GO_0044869
obsolete negative regulation by host of viral exo-alpha-sialidase activity definition "The process in which a host organism decreases viral exo-alpha-sialidase activity, the catalysis of the hydrolysis of peptide bonds in a protein."
obsolete negative regulation by host of viral exo-alpha-sialidase activity label "negative regulation by host of viral exo-alpha-sialidase activity"
obsolete negative regulation by host of viral exo-alpha-sialidase activity EquivalentTo obsolete modulation by host of symbiont catalytic activity and (negatively regulates some exo-alpha-sialidase activity)
obsolete negative regulation by host of viral exo-alpha-sialidase activity SubClassOf obsolete negative regulation by host of symbiont catalytic activity
obsolete negative regulation by host of viral exo-alpha-sialidase activity SubClassOf modulation by host of viral exo-alpha-sialidase activity
obsolete negative regulation by host of viral exo-alpha-sialidase activity SubClassOf negatively regulates some exo-alpha-sialidase activity
obsolete negative regulation by host of viral exo-alpha-sialidase activity label "obsolete negative regulation by host of viral exo-alpha-sialidase activity"
obsolete negative regulation by host of viral exo-alpha-sialidase activity deprecated true
obsolete negative regulation by host of viral exo-alpha-sialidase activity term tracker item "https://github.com/geneontology/go-ontology/issues/29205"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI)
obsolete negative regulation by host of viral exo-alpha-sialidase activity definition "OBSOLETE. The process in which a host organism decreases viral exo-alpha-sialidase activity, the catalysis of the hydrolysis of peptide bonds in a protein."
obsolete negative regulation by host of viral exo-alpha-sialidase activity comment "This term was obsoleted because it represents a molecular function."
Here's a diff of how these changes impact the classified ontology:
Ontology comparison
Left
http://purl.obolibrary.org/obo/go.owl
http://purl.obolibrary.org/obo/go/releases/2024-11-13/go.owl
file:/__w/go-ontology/go-ontology/src/ontology/../../reasoned-master.owl/reasoned.owl
Right
http://purl.obolibrary.org/obo/go.owl
http://purl.obolibrary.org/obo/go/releases/2024-11-13/go.owl
file:/__w/go-ontology/go-ontology/src/ontology/../../reasoned-pr.owl/reasoned.owl
Ontology imports
Ontology annotations
blocking of symbiont entry into host cell
http://purl.obolibrary.org/obo/GO_0046597
Added
obsolete modulation by host of symbiont catalytic activity
http://purl.obolibrary.org/obo/GO_0052422
Removed
obsolete modulation by host of symbiont catalytic activity label "modulation by host of symbiont catalytic activity"
obsolete modulation by host of symbiont catalytic activity definition "The process in which a host organism effects a change in the enzyme activity of its symbiont organism."
database_cross_reference "GOC:tb"
database_cross_reference "GOC:mtg_pamgo_17jul06"
obsolete modulation by host of symbiont catalytic activity SubClassOf modulation by host of symbiont process
Added
obsolete modulation by host of symbiont catalytic activity deprecated true
obsolete modulation by host of symbiont catalytic activity definition "OBSOLETE. The process in which a host organism effects a change in the enzyme activity of its symbiont organism."
database_cross_reference "GOC:tb"
database_cross_reference "GOC:mtg_pamgo_17jul06"
obsolete modulation by host of symbiont catalytic activity comment "This term was obsoleted because it represents a molecular function."
obsolete modulation by host of symbiont catalytic activity label "obsolete modulation by host of symbiont catalytic activity"
obsolete modulation by host of symbiont catalytic activity term tracker item "https://github.com/geneontology/go-ontology/issues/29205"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI)
obsolete modulation by host of viral RNA-binding transcription factor activity
http://purl.obolibrary.org/obo/GO_1990969
Removed
obsolete modulation by host of viral RNA-binding transcription factor activity definition "A process in which a host organism modulates the frequency, rate or extent of the activity of a viral RNA-binding transcription factor."
database_cross_reference "GOC:bf"
database_cross_reference "GOC:PARL"
database_cross_reference "PMID:25116364"
obsolete modulation by host of viral RNA-binding transcription factor activity label "modulation by host of viral RNA-binding transcription factor activity"
obsolete modulation by host of viral RNA-binding transcription factor activity EquivalentTo obsolete modulation by host of symbiont catalytic activity and (regulates some RNA-binding transcription regulator activity)
obsolete modulation by host of viral RNA-binding transcription factor activity SubClassOf obsolete modulation by host of symbiont catalytic activity
obsolete modulation by host of viral RNA-binding transcription factor activity SubClassOf regulates some RNA-binding transcription regulator activity
obsolete modulation by host of viral RNA-binding transcription factor activity SubClassOf modulation by host of viral transcription
Added
obsolete modulation by host of viral RNA-binding transcription factor activity label "obsolete modulation by host of viral RNA-binding transcription factor activity"
obsolete modulation by host of viral RNA-binding transcription factor activity comment "This term was obsoleted because it represents a molecular function."
obsolete modulation by host of viral RNA-binding transcription factor activity deprecated true
obsolete modulation by host of viral RNA-binding transcription factor activity definition "OBSOLETE. A process in which a host organism modulates the frequency, rate or extent of the activity of a viral RNA-binding transcription factor."
database_cross_reference "GOC:bf"
database_cross_reference "GOC:PARL"
database_cross_reference "PMID:25116364"
obsolete modulation by host of viral RNA-binding transcription factor activity term tracker item "https://github.com/geneontology/go-ontology/issues/29205"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI)
obsolete negative regulation by host of symbiont catalytic activity
http://purl.obolibrary.org/obo/GO_0052403
Removed
obsolete negative regulation by host of symbiont catalytic activity definition "Any process in which an organism stops, prevents, or reduces the frequency, rate or extent of symbiont enzyme activity. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction."
obsolete negative regulation by host of symbiont catalytic activity label "negative regulation by host of symbiont catalytic activity"
obsolete negative regulation by host of symbiont catalytic activity EquivalentTo obsolete modulation by host of symbiont catalytic activity and (negatively regulates some catalytic activity)
obsolete negative regulation by host of symbiont catalytic activity SubClassOf negatively regulates some catalytic activity
obsolete negative regulation by host of symbiont catalytic activity SubClassOf obsolete modulation by host of symbiont catalytic activity
Added
obsolete negative regulation by host of symbiont catalytic activity definition "OBSOLETE. Any process in which an organism stops, prevents, or reduces the frequency, rate or extent of symbiont enzyme activity. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction."
obsolete negative regulation by host of symbiont catalytic activity term tracker item "https://github.com/geneontology/go-ontology/issues/29205"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI)
obsolete negative regulation by host of symbiont catalytic activity comment "This term was obsoleted because it represents a molecular function."
obsolete negative regulation by host of symbiont catalytic activity label "obsolete negative regulation by host of symbiont catalytic activity"
obsolete negative regulation by host of symbiont catalytic activity deprecated true
obsolete negative regulation by host of viral exo-alpha-sialidase activity
http://purl.obolibrary.org/obo/GO_0044869
Removed
obsolete negative regulation by host of viral exo-alpha-sialidase activity definition "The process in which a host organism decreases viral exo-alpha-sialidase activity, the catalysis of the hydrolysis of peptide bonds in a protein."
obsolete negative regulation by host of viral exo-alpha-sialidase activity label "negative regulation by host of viral exo-alpha-sialidase activity"
obsolete negative regulation by host of viral exo-alpha-sialidase activity EquivalentTo obsolete modulation by host of symbiont catalytic activity and (negatively regulates some exo-alpha-sialidase activity)
obsolete negative regulation by host of viral exo-alpha-sialidase activity SubClassOf obsolete negative regulation by host of symbiont catalytic activity
obsolete negative regulation by host of viral exo-alpha-sialidase activity SubClassOf modulation by host of viral exo-alpha-sialidase activity
obsolete negative regulation by host of viral exo-alpha-sialidase activity SubClassOf negatively regulates some exo-alpha-sialidase activity
Added
obsolete negative regulation by host of viral exo-alpha-sialidase activity label "obsolete negative regulation by host of viral exo-alpha-sialidase activity"
obsolete negative regulation by host of viral exo-alpha-sialidase activity deprecated true
obsolete negative regulation by host of viral exo-alpha-sialidase activity term tracker item "https://github.com/geneontology/go-ontology/issues/29205"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI)
obsolete negative regulation by host of viral exo-alpha-sialidase activity definition "OBSOLETE. The process in which a host organism decreases viral exo-alpha-sialidase activity, the catalysis of the hydrolysis of peptide bonds in a protein."
obsolete negative regulation by host of viral exo-alpha-sialidase activity comment "This term was obsoleted because it represents a molecular function."