fixed xef for #28523

[github-actions[bot]]

Here's a diff of how these changes impact the classified ontology:

Ontology comparison

Left

• Ontology IRI: http://purl.obolibrary.org/obo/go.owl
• Version IRI: http://purl.obolibrary.org/obo/go/releases/2024-11-13/go.owl
• Loaded from: file:/__w/go-ontology/go-ontology/src/ontology/../../reasoned-master.owl/reasoned.owl

Right

• Ontology IRI: http://purl.obolibrary.org/obo/go.owl
• Version IRI: http://purl.obolibrary.org/obo/go/releases/2024-11-13/go.owl
• Loaded from: file:/__w/go-ontology/go-ontology/src/ontology/../../reasoned-pr.owl/reasoned.owl

Ontology imports

Ontology annotations

L-Ala-D/L-Glu epimerase activity http://purl.obolibrary.org/obo/GO_0103031

Removed

• L-Ala-D/L-Glu epimerase activity definition "Catalysis of the reaction: L-alanyl-D-glutamate = L-alanyl-L-glutamate."

  • database_cross_reference "GOC:pz"

  • database_cross_reference "EC:5.1.1.-"

• L-Ala-D/L-Glu epimerase activity database_cross_reference "MetaCyc:RXN0-5228"

Added

• L-Ala-D/L-Glu epimerase activity definition "Catalysis of the reaction:L-alanyl-L-glutamate = L-alanyl-D-glutamate."

  • database_cross_reference "RHEA:28394"

• L-Ala-D/L-Glu epimerase activity database_cross_reference "MetaCyc:RXN0-5228"

  • source "skos:exactMatch"

• L-Ala-D/L-Glu epimerase activity database_cross_reference "EC:5.1.1.20"

  • source "skos:exactMatch"

[heparan sulfate]-glucosamine N-sulfotransferase activity http://purl.obolibrary.org/obo/GO_0015016

Removed

• [heparan sulfate]-glucosamine N-sulfotransferase activity database_cross_reference "RHEA:21980"

Added

• [heparan sulfate]-glucosamine N-sulfotransferase activity database_cross_reference "RHEA:21980"
  • source "skos:exactMatch"

heparan sulfate N-deacetylase activity http://purl.obolibrary.org/obo/GO_0102140

Removed

• heparan sulfate N-deacetylase activity definition "Catalysis of the reaction: H2O + [heparan sulfate]-N-acetyl-alpha-D-glucosamine = acetate + H+ + [heparan sulfate]-alpha-D-glucosamine."

  • database_cross_reference "GOC:pz"

  • database_cross_reference "EC:3.1.1.-"

• heparan sulfate N-deacetylase activity database_cross_reference "MetaCyc:RXN-11557"

Added

• heparan sulfate N-deacetylase activity database_cross_reference "RHEA:70587"

  • source "skos:exactMatch"

• heparan sulfate N-deacetylase activity definition "Catalysis of the reaction: H2O + [heparan sulfate]-N-acetyl-alpha-D-glucosamine = acetate + H+ + [heparan sulfate]-alpha-D-glucosamine."

  • database_cross_reference "RHEA:70587"

• heparan sulfate N-deacetylase activity term tracker item "https://github.com/geneontology/go-ontology/issues/28523"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI)

sulfate assimilation via adenylyl sulfate reduction http://purl.obolibrary.org/obo/GO_0010134

Removed

• sulfate assimilation via adenylyl sulfate reduction definition "The pathway by which inorganic sulfate is activated, reduced and incorporated into sulfated compounds, where the activated sulfate, adenylyl-sulfate, is reduced to sulfite by the activity of adenylyl-sulfate reductase."
  • database_cross_reference "EC:1.8.99.2"

Added

• sulfate assimilation via adenylyl sulfate reduction term tracker item "https://github.com/geneontology/go-ontology/pull/29161"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI)

• sulfate assimilation via adenylyl sulfate reduction definition "The pathway by which inorganic sulfate is activated, reduced and incorporated into sulfated compounds, where the activated sulfate, adenylyl-sulfate, is reduced to sulfite by the activity of adenylyl-sulfate reductase."

  • database_cross_reference "MetaCyc:SULFMETII-PWY"