Obsoleted 2 terms; fixes #25780.

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Here's a diff of how these changes impact the classified ontology:

Ontology comparison

Left

• Ontology IRI: http://purl.obolibrary.org/obo/go.owl
• Version IRI: http://purl.obolibrary.org/obo/go/releases/2024-11-15/go.owl
• Loaded from: file:/__w/go-ontology/go-ontology/src/ontology/../../reasoned-master.owl/reasoned.owl

Right

• Ontology IRI: http://purl.obolibrary.org/obo/go.owl
• Version IRI: http://purl.obolibrary.org/obo/go/releases/2024-11-15/go.owl
• Loaded from: file:/__w/go-ontology/go-ontology/src/ontology/../../reasoned-pr.owl/reasoned.owl

Ontology imports

Ontology annotations

2,3-bisphosphoglycerate-dependent phosphoglycerate mutase activity http://purl.obolibrary.org/obo/GO_0046538

Removed

• 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase activity label "2,3-bisphosphoglycerate-dependent phosphoglycerate mutase activity"

• 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase activity database_cross_reference "MetaCyc:RXN-15513"

• 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase activity database_cross_reference "KEGG_REACTION:R01516"

• 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase activity database_cross_reference "EC:5.4.2.11"

  • source "skos:exactMatch"

• 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase activity definition "Catalysis of the reaction: (2R)-2-phosphoglycerate = (2R)-3-phosphoglycerate; this reaction mechanism uses 2,3-bisphosphoglycerate as a phosphate donor."

  • database_cross_reference "EC:5.4.2.11"

• 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase activity has_related_synonym "glycerate phosphomutase (diphosphoglycerate cofactor) activity"

  • database_cross_reference "EC:5.4.2.11"

• 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase activity SubClassOf phosphoglycerate mutase activity

Added

• 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase activity deprecated true

• 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase activity comment "The reason for obsoletion is that this term is unnecessarily specific."

• 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase activity label "obsolete 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase activity"

• 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase activity definition "OBSOLETE. Catalysis of the reaction: (2R)-2-phosphoglycerate = (2R)-3-phosphoglycerate; this reaction mechanism uses 2,3-bisphosphoglycerate as a phosphate donor."

  • database_cross_reference "GOC:rynl"

• 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase activity term replaced by "GO:0004619"

2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity http://purl.obolibrary.org/obo/GO_0046537

Removed

• 2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity database_cross_reference "MetaCyc:3PGAREARR-RXN"

• 2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity definition "Catalysis of the reaction: (2R)-2-phosphoglycerate = (2R)-3-phosphoglycerate; this reaction does not require the cofactor 2,3-bisphosphoglycerate."

  • database_cross_reference "EC:5.4.2.12"

• 2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity label "2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity"

• 2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity database_cross_reference "EC:5.4.2.12"

  • source "skos:exactMatch"

• 2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity SubClassOf phosphoglycerate mutase activity

Added

• 2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity label "obsolete 2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity"

• 2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity definition "OBSOLETE. Catalysis of the reaction: (2R)-2-phosphoglycerate = (2R)-3-phosphoglycerate; this reaction does not require the cofactor 2,3-bisphosphoglycerate."

  • database_cross_reference "GOC:rynl"

• 2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity term replaced by "GO:0004619"

• 2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity deprecated true

• 2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity comment "The reason for obsoletion is that this term is unnecessarily specific."

phosphoglycerate mutase activity http://purl.obolibrary.org/obo/GO_0004619

Added

• phosphoglycerate mutase activity has_narrow_synonym "2,3-bisphosphoglycerate-dependent phosphoglycerate mutase activity"

• phosphoglycerate mutase activity database_cross_reference "EC:5.4.2.11"

  • source "skos:narrowMatch"

• phosphoglycerate mutase activity database_cross_reference "EC:5.4.2.12"

  • source "skos:narrowMatch"

• phosphoglycerate mutase activity database_cross_reference "MetaCyc:3PGAREARR-RXN"

  • source "skos:narrowMatch"

• phosphoglycerate mutase activity database_cross_reference "MetaCyc:RXN-15513"

  • source "skos:narrowMatch"

• phosphoglycerate mutase activity has_narrow_synonym "2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity"

• phosphoglycerate mutase activity database_cross_reference "KEGG_REACTION:R01516"