obsoleted terms fixes #26621

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Here's a diff of how these changes impact the classified ontology:

Ontology comparison

Left

• Ontology IRI: http://purl.obolibrary.org/obo/go.owl
• Version IRI: http://purl.obolibrary.org/obo/go/releases/2024-11-18/go.owl
• Loaded from: file:/__w/go-ontology/go-ontology/src/ontology/../../reasoned-master.owl/reasoned.owl

Right

• Ontology IRI: http://purl.obolibrary.org/obo/go.owl
• Version IRI: http://purl.obolibrary.org/obo/go/releases/2024-11-18/go.owl
• Loaded from: file:/__w/go-ontology/go-ontology/src/ontology/../../reasoned-pr.owl/reasoned.owl

Ontology imports

Ontology annotations

endocytosis involved in viral entry into host cell http://purl.obolibrary.org/obo/GO_0075509

Removed

• endocytosis involved in viral entry into host cell EquivalentTo endocytosis and (part_of some symbiont entry into host cell)

• endocytosis involved in viral entry into host cell SubClassOf part_of some symbiont entry into host cell

• endocytosis involved in viral entry into host cell SubClassOf endocytosis

• endocytosis involved in viral entry into host cell SubClassOf transport of virus

Added

• endocytosis involved in viral entry into host cell SubClassOf symbiont entry into host cell

exit of virus from host cell nucleus http://purl.obolibrary.org/obo/GO_0039674

Added

• exit of virus from host cell nucleus SubClassOf viral process

obsolete modulation by virus of host cellular process http://purl.obolibrary.org/obo/GO_0019054

Removed

• obsolete modulation by virus of host cellular process label "modulation by virus of host cellular process"

• obsolete modulation by virus of host cellular process definition "The process in which a virus effects a change in the processes and activities of its host organism."

  • database_cross_reference "GOC:jl"

• obsolete modulation by virus of host cellular process SubClassOf obsolete modulation by virus of host process

Added

• obsolete modulation by virus of host cellular process comment "This term has been replaced by the more general symbiont-mediated perturbation of host cellular process ; GO:0044068."

• obsolete modulation by virus of host cellular process definition "OBSOLETE. The process in which a virus effects a change in the processes and activities of its host organism."

  • database_cross_reference "GOC:jl"

• obsolete modulation by virus of host cellular process term tracker item "https://github.com/geneontology/go-ontology/issues/26621"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI)

• obsolete modulation by virus of host cellular process deprecated true

• obsolete modulation by virus of host cellular process term replaced by "GO:0044068"

• obsolete modulation by virus of host cellular process label "obsolete modulation by virus of host cellular process"

obsolete modulation by virus of host process http://purl.obolibrary.org/obo/GO_0019048

Removed

• obsolete modulation by virus of host process label "modulation by virus of host process"

• obsolete modulation by virus of host process in_subset goslim_virus

• obsolete modulation by virus of host process definition "The process in which a virus effects a change in the structure or processes of its host organism."

  • database_cross_reference "GOC:jl"

  • database_cross_reference "ISBN:0781718325"

  • database_cross_reference "GOC:bf"

  • database_cross_reference "UniProtKB-KW:KW-0945"

• obsolete modulation by virus of host process SubClassOf symbiont-mediated perturbation of host process

• obsolete modulation by virus of host process SubClassOf viral process

Added

• obsolete modulation by virus of host process deprecated true

• obsolete modulation by virus of host process label "obsolete modulation by virus of host process"

• obsolete modulation by virus of host process definition "OBSOLETE. The process in which a virus effects a change in the structure or processes of its host organism."

  • database_cross_reference "GOC:jl"

  • database_cross_reference "ISBN:0781718325"

  • database_cross_reference "GOC:bf"

  • database_cross_reference "UniProtKB-KW:KW-0945"

• obsolete modulation by virus of host process comment "This term has been replaced by the more general symbiont-mediated perturbation of host process ; GO:0044003."

• obsolete modulation by virus of host process term replaced by "GO:0044003"

• obsolete modulation by virus of host process term tracker item "https://github.com/geneontology/go-ontology/issues/26621"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI)

receptor-mediated endocytosis of virus by host cell http://purl.obolibrary.org/obo/GO_0019065

Added

• receptor-mediated endocytosis of virus by host cell SubClassOf part_of some symbiont entry into host cell

symbiont-mediated perturbation of host resistance gene-dependent defense response http://purl.obolibrary.org/obo/GO_0052158

Added

• symbiont-mediated perturbation of host resistance gene-dependent defense response SubClassOf symbiont-mediated perturbation of host defenses