Closed sjm41 closed 3 days ago
Here's a diff of how these changes impact the classified ontology:
http://purl.obolibrary.org/obo/go.owl
http://purl.obolibrary.org/obo/go/releases/2024-11-19/go.owl
file:/__w/go-ontology/go-ontology/src/ontology/../../reasoned-master.owl/reasoned.owl
file:/__w/go-ontology/go-ontology/src/ontology/../../reasoned-pr.owl/reasoned.owl
http://purl.obolibrary.org/obo/GO_0009051
pentose-phosphate shunt, oxidative branch EquivalentTo metabolic process and (has_part some 6-phosphogluconolactonase activity) and (starts with some glucose-6-phosphate dehydrogenase activity) and (ends with some phosphogluconate dehydrogenase (decarboxylating) activity) and (has primary output some NADPH(4-)) and (has primary input some beta-D-glucose 6-phosphate(2-)) and (has primary input some NADP(3-))
pentose-phosphate shunt, oxidative branch SubClassOf glucose 6-phosphate metabolic process
pentose-phosphate shunt, oxidative branch SubClassOf has primary input some beta-D-glucose 6-phosphate(2-)
pentose-phosphate shunt, oxidative branch EquivalentTo metabolic process and (has_part some 6-phosphogluconolactonase activity) and (starts with some glucose-6-phosphate dehydrogenase activity) and (ends with some phosphogluconate dehydrogenase (decarboxylating) activity) and (has primary output some NADPH(4-)) and (has primary input some NADP(3-)) and (has primary input some D-glucopyranose 6-phosphate(2-))
pentose-phosphate shunt, oxidative branch SubClassOf has primary input some D-glucopyranose 6-phosphate(2-)
pentose-phosphate shunt, oxidative branch SubClassOf carbohydrate derivative metabolic process
Here's a diff of how these changes impact the classified ontology:
Ontology comparison
Left
http://purl.obolibrary.org/obo/go.owlhttp://purl.obolibrary.org/obo/go/releases/2024-11-19/go.owlfile:/__w/go-ontology/go-ontology/src/ontology/../../reasoned-master.owl/reasoned.owlRight
http://purl.obolibrary.org/obo/go.owlhttp://purl.obolibrary.org/obo/go/releases/2024-11-19/go.owlfile:/__w/go-ontology/go-ontology/src/ontology/../../reasoned-pr.owl/reasoned.owlOntology imports
Ontology annotations
pentose-phosphate shunt, oxidative branch
http://purl.obolibrary.org/obo/GO_0009051Removed
pentose-phosphate shunt, oxidative branch EquivalentTo metabolic process and (has_part some 6-phosphogluconolactonase activity) and (starts with some glucose-6-phosphate dehydrogenase activity) and (ends with some phosphogluconate dehydrogenase (decarboxylating) activity) and (has primary output some NADPH(4-)) and (has primary input some beta-D-glucose 6-phosphate(2-)) and (has primary input some NADP(3-))
pentose-phosphate shunt, oxidative branch SubClassOf glucose 6-phosphate metabolic process
pentose-phosphate shunt, oxidative branch SubClassOf has primary input some beta-D-glucose 6-phosphate(2-)
Added
pentose-phosphate shunt, oxidative branch EquivalentTo metabolic process and (has_part some 6-phosphogluconolactonase activity) and (starts with some glucose-6-phosphate dehydrogenase activity) and (ends with some phosphogluconate dehydrogenase (decarboxylating) activity) and (has primary output some NADPH(4-)) and (has primary input some NADP(3-)) and (has primary input some D-glucopyranose 6-phosphate(2-))
pentose-phosphate shunt, oxidative branch SubClassOf has primary input some D-glucopyranose 6-phosphate(2-)
pentose-phosphate shunt, oxidative branch SubClassOf carbohydrate derivative metabolic process