geneontology / go-ontology

Source ontology files for the Gene Ontology

http://geneontology.org/page/download-ontology

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Obsoleted glycine catabolic process to creatine; fixes #29242. #29258

Closed raymond91125 closed 2 days ago

github-actions[bot] commented 2 days ago

Here's a diff of how these changes impact the classified ontology:

Ontology comparison

Left

Ontology IRI: http://purl.obolibrary.org/obo/go.owl
Version IRI: http://purl.obolibrary.org/obo/go/releases/2024-11-20/go.owl
Loaded from: file:/__w/go-ontology/go-ontology/src/ontology/../../reasoned-master.owl/reasoned.owl

Right

Ontology IRI: http://purl.obolibrary.org/obo/go.owl
Version IRI: http://purl.obolibrary.org/obo/go/releases/2024-11-20/go.owl
Loaded from: file:/__w/go-ontology/go-ontology/src/ontology/../../reasoned-pr.owl/reasoned.owl

Ontology imports

Ontology annotations

glycine catabolic process to creatine `http://purl.obolibrary.org/obo/GO_0019463`

Removed

glycine catabolic process to creatine label "glycine catabolic process to creatine"
glycine catabolic process to creatine definition "The chemical reactions and pathways resulting in the breakdown of glycine into other compounds, including creatine."
- database_cross_reference "GOC:go_curators"
glycine catabolic process to creatine EquivalentTo catabolic process and (has primary output some creatine zwitterion) and (has primary input some glycine zwitterion)
glycine catabolic process to creatine SubClassOf creatine metabolic process
glycine catabolic process to creatine SubClassOf has primary output some creatine zwitterion
glycine catabolic process to creatine SubClassOf glycine catabolic process

Added

glycine catabolic process to creatine deprecated true
glycine catabolic process to creatine term tracker item "https://github.com/geneontology/go-ontology/issues/29242"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI)
glycine catabolic process to creatine definition "OBSOLETE. The chemical reactions and pathways resulting in the breakdown of glycine into other compounds, including creatine."
- database_cross_reference "GOC:go_curators"
glycine catabolic process to creatine comment "The reason for obsoletion is that there is no evidence that this process exists."
glycine catabolic process to creatine label "obsolete glycine catabolic process to creatine"