geneontology / go-ontology

Source ontology files for the Gene Ontology
http://geneontology.org/page/download-ontology
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Simplify transmembrane transport logical definitions #29261

Closed balhoff closed 2 days ago

balhoff commented 2 days ago

For #26260.

github-actions[bot] commented 2 days ago

Here's a diff of how these changes impact the classified ontology:

Ontology comparison

Left

Right

Ontology imports

Ontology annotations

(+)-abscisic acid D-glucopyranosyl ester transmembrane transport http://purl.obolibrary.org/obo/GO_1902418

Removed

Added

(R)-carnitine transmembrane transport http://purl.obolibrary.org/obo/GO_1902270

Removed

Added

2-isopropylmalate(2-) transmembrane transport http://purl.obolibrary.org/obo/GO_1902357

Removed

Added

2-keto-3-deoxygluconate transmembrane transport http://purl.obolibrary.org/obo/GO_0046411

Removed

Added

3'-phospho-5'-adenylyl sulfate transmembrane transport http://purl.obolibrary.org/obo/GO_1902559

Removed

Added

5'-adenylyl sulfate transmembrane transport http://purl.obolibrary.org/obo/GO_1902558

Removed

Added

5-amino-1-ribofuranosylimidazole-4-carboxamide transmembrane transport http://purl.obolibrary.org/obo/GO_1903088

Removed

Added

CMP-N-acetylneuraminate transmembrane transport http://purl.obolibrary.org/obo/GO_0015782

Removed

Added

D-alanine transmembrane transport http://purl.obolibrary.org/obo/GO_0042941

Removed

Added

D-allose transmembrane transport http://purl.obolibrary.org/obo/GO_0015754

Removed

Added

D-aspartate transmembrane transport http://purl.obolibrary.org/obo/GO_0070777

Removed

Added

D-galactonate transmembrane transport http://purl.obolibrary.org/obo/GO_0042875

Removed

Added

D-glucarate transmembrane transport http://purl.obolibrary.org/obo/GO_0042870

Removed

Added

D-glucose transmembrane transport http://purl.obolibrary.org/obo/GO_1904659

Removed

Added

D-glucuronate transmembrane transport http://purl.obolibrary.org/obo/GO_0042874

Removed

Added

D-methionine transmembrane transport http://purl.obolibrary.org/obo/GO_0048473

Removed

Added

D-ribose transmembrane transport http://purl.obolibrary.org/obo/GO_0015752

Removed

Added

D-serine transmembrane transport http://purl.obolibrary.org/obo/GO_0042942

Removed

Added

D-xylose transmembrane transport http://purl.obolibrary.org/obo/GO_0015753

Removed

Added

FAD transmembrane transport http://purl.obolibrary.org/obo/GO_0035350

Removed

Added

GDP-fucose transmembrane transport http://purl.obolibrary.org/obo/GO_0015783

Removed

Added

GDP-mannose transmembrane transport http://purl.obolibrary.org/obo/GO_1990570

Removed

Added

Golgi calcium ion transmembrane transport http://purl.obolibrary.org/obo/GO_0061856

Removed

Added

L-arabinose transmembrane transport http://purl.obolibrary.org/obo/GO_0042882

Removed

Added

L-arginine transmembrane export from vacuole http://purl.obolibrary.org/obo/GO_1990818

Removed

Added

L-ascorbic acid transmembrane transport http://purl.obolibrary.org/obo/GO_0015882

Removed

Added

L-glutamate transmembrane export from vacuole http://purl.obolibrary.org/obo/GO_0089704

Removed

Added

L-histidine transmembrane transport http://purl.obolibrary.org/obo/GO_0089709

Removed

Added

L-idonate transmembrane transport http://purl.obolibrary.org/obo/GO_0015726

Removed

Added

L-lysine transmembrane export from vacuole http://purl.obolibrary.org/obo/GO_0089707

Removed

Added

L-ornithine transmembrane export from vacuole http://purl.obolibrary.org/obo/GO_0089706

Removed

Added

L-tyrosine transmembrane import into vacuole http://purl.obolibrary.org/obo/GO_0090514

Removed

Added

L-valine transmembrane import into vacuole http://purl.obolibrary.org/obo/GO_0110101

Removed

Added

NAD transmembrane transport http://purl.obolibrary.org/obo/GO_0035352

Removed

Added

S-adenosyl-L-methionine transmembrane transport http://purl.obolibrary.org/obo/GO_1901962

Removed

Added

UDP-N-acetylgalactosamine transmembrane transport http://purl.obolibrary.org/obo/GO_0015789

Removed

Added

UDP-N-acetylglucosamine transmembrane transport http://purl.obolibrary.org/obo/GO_1990569

Removed

Added

UDP-galactose transmembrane transport http://purl.obolibrary.org/obo/GO_0072334

Removed

Added

UDP-glucose transmembrane transport http://purl.obolibrary.org/obo/GO_0015786

Removed

Added

UDP-glucuronic acid transmembrane transport http://purl.obolibrary.org/obo/GO_0015787

Removed

Added

UDP-xylose transmembrane transport http://purl.obolibrary.org/obo/GO_0015790

Removed

Added

acetate transmembrane transport http://purl.obolibrary.org/obo/GO_0035433

Removed

Added

acetyl-CoA transmembrane transport http://purl.obolibrary.org/obo/GO_0035348

Removed

Added

acyl carnitine transmembrane transport http://purl.obolibrary.org/obo/GO_1902616

Removed

Added

adenosine 3',5'-bisphosphate transmembrane transport http://purl.obolibrary.org/obo/GO_0071106

Removed

Added

aldarate transmembrane transport http://purl.obolibrary.org/obo/GO_0042869

Removed

Added

aldonate transmembrane transport http://purl.obolibrary.org/obo/GO_0042873

Removed

Added

aluminum ion transmembrane transport http://purl.obolibrary.org/obo/GO_1902602

Removed

Added

amino acid transmembrane export from vacuole http://purl.obolibrary.org/obo/GO_0032974

Removed

Added

amino acid transmembrane import into vacuole http://purl.obolibrary.org/obo/GO_0032975

Removed

Added

amino acid transmembrane transport http://purl.obolibrary.org/obo/GO_0003333

Removed

Added

ammonium transmembrane transport http://purl.obolibrary.org/obo/GO_0072488

Removed

Added

arabinan transmembrane transport http://purl.obolibrary.org/obo/GO_0042899

Removed

Added

arabinitol transmembrane transport http://purl.obolibrary.org/obo/GO_0015792

Removed

Added

arabinose transmembrane transport http://purl.obolibrary.org/obo/GO_0015751

Removed

Added

arsenate ion transmembrane transport http://purl.obolibrary.org/obo/GO_1901684

Removed

Added

asparagine transmembrane import into vacuole http://purl.obolibrary.org/obo/GO_1990591

Removed

Added

autoinducer AI-2 transmembrane transport http://purl.obolibrary.org/obo/GO_1905887

Removed

Added

azole transmembrane transport http://purl.obolibrary.org/obo/GO_0045117

Removed

Added

bicyclomycin transmembrane transport http://purl.obolibrary.org/obo/GO_0015905

Removed

Added

borate transmembrane transport http://purl.obolibrary.org/obo/GO_0035445

Removed

Added

cadmium ion import into vacuole http://purl.obolibrary.org/obo/GO_0036249

Removed

Added

calcium ion transmembrane import into cytosol http://purl.obolibrary.org/obo/GO_0097553

Removed

Added

calcium ion transport from cytosol to endoplasmic reticulum http://purl.obolibrary.org/obo/GO_1903515

Removed

Added

carbohydrate transmembrane transport http://purl.obolibrary.org/obo/GO_0034219

Removed

Added

carbon dioxide transmembrane transport http://purl.obolibrary.org/obo/GO_0035378

Removed

Added

carboxylic acid transmembrane transport http://purl.obolibrary.org/obo/GO_1905039

Removed

Added

carnitine transmembrane transport http://purl.obolibrary.org/obo/GO_1902603

Removed

Added

chloramphenicol transmembrane transport http://purl.obolibrary.org/obo/GO_0042892

Removed

Added

chloride transmembrane transport http://purl.obolibrary.org/obo/GO_1902476

Removed

Added

coenzyme A transmembrane transport http://purl.obolibrary.org/obo/GO_0035349

Removed

Added

creatine transmembrane transport http://purl.obolibrary.org/obo/GO_0015881

Removed

Added

cytosol to endoplasmic reticulum transport http://purl.obolibrary.org/obo/GO_0046967

Removed

Added

fatty acid transmembrane transport http://purl.obolibrary.org/obo/GO_1902001

Removed

Added

fluoride transmembrane transport http://purl.obolibrary.org/obo/GO_1903424

Removed

Added

folate transmembrane transport http://purl.obolibrary.org/obo/GO_0098838

Removed

Added

fructose transmembrane transport http://purl.obolibrary.org/obo/GO_0015755

Removed

Added

fucose transmembrane transport http://purl.obolibrary.org/obo/GO_0015756

Removed

Added

galactarate transmembrane transport http://purl.obolibrary.org/obo/GO_1902300

Removed

Added

galactitol transmembrane transport http://purl.obolibrary.org/obo/GO_0015796

Removed

Added

galactose transmembrane transport http://purl.obolibrary.org/obo/GO_0015757

Removed

Added

galacturonate transmembrane transport http://purl.obolibrary.org/obo/GO_0015737

Removed

Added

gibberellic acid transmembrane transport http://purl.obolibrary.org/obo/GO_1905200

Removed

Added

gluconate transmembrane transport http://purl.obolibrary.org/obo/GO_0035429

Removed

Added

glucosylglycerol transmembrane transport http://purl.obolibrary.org/obo/GO_0051475

Removed

Added

glucuronate transmembrane transport http://purl.obolibrary.org/obo/GO_0015738

Removed

Added

glutathione transmembrane import into vacuole http://purl.obolibrary.org/obo/GO_0071996

Removed

Added

glutathione transmembrane transport http://purl.obolibrary.org/obo/GO_0034775

Removed

Added

glycerate transmembrane transport http://purl.obolibrary.org/obo/GO_1901975

Removed

Added

glycerol transmembrane transport http://purl.obolibrary.org/obo/GO_0015793

Removed

Added

glycerol-2-phosphate transmembrane transport http://purl.obolibrary.org/obo/GO_0070811

Removed

Added

glycerol-3-phosphate transmembrane transport http://purl.obolibrary.org/obo/GO_0015794

Removed

Added

glycerophosphodiester transmembrane transport http://purl.obolibrary.org/obo/GO_0001407

Removed

Added

glycolate transmembrane transport http://purl.obolibrary.org/obo/GO_0097339

Removed

Added

guanine nucleotide transmembrane transport http://purl.obolibrary.org/obo/GO_1903790

Removed

Added

guanine transmembrane transport http://purl.obolibrary.org/obo/GO_1903716

Removed

Added

hexose transmembrane transport http://purl.obolibrary.org/obo/GO_0008645

Removed

Added

hexuronate transmembrane transport http://purl.obolibrary.org/obo/GO_0015736

Removed

Added

hydrogen peroxide transmembrane transport http://purl.obolibrary.org/obo/GO_0080170

Removed

Added

inorganic anion transmembrane transport http://purl.obolibrary.org/obo/GO_0098661

Removed

Added

inorganic cation transmembrane transport http://purl.obolibrary.org/obo/GO_0098662

Removed

Added

inorganic ion transmembrane transport http://purl.obolibrary.org/obo/GO_0098660

Removed

Added

intracellular protein transmembrane transport http://purl.obolibrary.org/obo/GO_0065002

Removed

Added

iodide transmembrane transport http://purl.obolibrary.org/obo/GO_1904200

Removed

Added

iron-sulfur cluster transmembrane transport http://purl.obolibrary.org/obo/GO_1902497

Removed

Added

lactate transmembrane transport http://purl.obolibrary.org/obo/GO_0035873

Removed

Added

lithium ion transmembrane transport http://purl.obolibrary.org/obo/GO_0090452

Removed

Added

magnesium ion transport from cytosol to endoplasmic reticulum http://purl.obolibrary.org/obo/GO_0160176

Removed

Added

malate transmembrane transport http://purl.obolibrary.org/obo/GO_0071423

Removed

Added

malonic acid transmembrane transport http://purl.obolibrary.org/obo/GO_1901553

Removed

Added

maltose transmembrane transport http://purl.obolibrary.org/obo/GO_1904981

Removed

Added

mannitol transmembrane transport http://purl.obolibrary.org/obo/GO_0015797

Removed

Added

mannose transmembrane transport http://purl.obolibrary.org/obo/GO_0015761

Removed

Added

methylammonium transmembrane transport http://purl.obolibrary.org/obo/GO_0072489

Removed

Added

monoatomic anion transmembrane transport http://purl.obolibrary.org/obo/GO_0098656

Removed

Added

monoatomic cation transmembrane transport http://purl.obolibrary.org/obo/GO_0098655

Removed

Added

monoatomic ion transmembrane transport http://purl.obolibrary.org/obo/GO_0034220

Removed

Added

monosaccharide transmembrane transport http://purl.obolibrary.org/obo/GO_0015749

Removed

Added

nicotinamide mononucleotide transmembrane transport http://purl.obolibrary.org/obo/GO_0035353

Removed

Added

nitrate transmembrane transport http://purl.obolibrary.org/obo/GO_0015706

Removed

Added

nucleoside transmembrane transport http://purl.obolibrary.org/obo/GO_1901642

Removed

Added

nucleotide transmembrane transport http://purl.obolibrary.org/obo/GO_1901679

Removed

Added

nucleotide-sugar transmembrane transport http://purl.obolibrary.org/obo/GO_0015780

Removed

Added

oligopeptide transmembrane transport http://purl.obolibrary.org/obo/GO_0035672

Removed

Added

organic acid transmembrane transport http://purl.obolibrary.org/obo/GO_1903825

Removed

Added

ornithine transmembrane import into vacuole http://purl.obolibrary.org/obo/GO_0090455

Removed

Added

oxaloacetate(2-) transmembrane transport http://purl.obolibrary.org/obo/GO_1902356

Removed

Added

p-aminobenzoyl-glutamate transmembrane transport http://purl.obolibrary.org/obo/GO_1902604

Removed

Added

pantothenate transmembrane transport http://purl.obolibrary.org/obo/GO_0015887

Removed

Added

pentose transmembrane transport http://purl.obolibrary.org/obo/GO_0015750

Removed

Added

phosphate ion transmembrane transport http://purl.obolibrary.org/obo/GO_0035435

Removed

Added

phosphoenolpyruvate transmembrane import into Golgi lumen http://purl.obolibrary.org/obo/GO_1990536

Removed

Added

phosphoenolpyruvate transmembrane transport http://purl.obolibrary.org/obo/GO_0089722

Removed

Added

phosphoglycerate transmembrane transport http://purl.obolibrary.org/obo/GO_0015713

Removed

Added

phytochelatin transmembrane transport http://purl.obolibrary.org/obo/GO_0071994

Removed

Added

polyamine transmembrane transport http://purl.obolibrary.org/obo/GO_1902047

Removed

Added

polyol transmembrane transport http://purl.obolibrary.org/obo/GO_0015791

Removed

Added

protein transmembrane transport http://purl.obolibrary.org/obo/GO_0071806

Removed

Added

proton transmembrane transport http://purl.obolibrary.org/obo/GO_1902600

Removed

Added

purine nucleobase transmembrane transport http://purl.obolibrary.org/obo/GO_1904823

Removed

Added

purine nucleoside transmembrane transport http://purl.obolibrary.org/obo/GO_0015860

Removed

Added

purine nucleotide-sugar transmembrane transport http://purl.obolibrary.org/obo/GO_0090480

Removed

Added

purine-containing compound transmembrane transport http://purl.obolibrary.org/obo/GO_0072530

Removed

Added

pyridoxal transmembrane transport http://purl.obolibrary.org/obo/GO_1903090

Removed

Added

pyridoxamine transmembrane transport http://purl.obolibrary.org/obo/GO_1903091

Removed

Added

pyridoxine transmembrane transport http://purl.obolibrary.org/obo/GO_1903092

Removed

Added

pyrimidine nucleobase transmembrane transport http://purl.obolibrary.org/obo/GO_1904082

Removed

Added

pyrimidine nucleotide-sugar transmembrane transport http://purl.obolibrary.org/obo/GO_0090481

Removed

Added

pyrimidine-containing compound transmembrane transport http://purl.obolibrary.org/obo/GO_0072531

Removed

Added

pyruvate transmembrane transport http://purl.obolibrary.org/obo/GO_1901475

Removed

Added

quinolinic acid transmembrane transport http://purl.obolibrary.org/obo/GO_1903222

Removed

Added

release of sequestered calcium ion into cytosol http://purl.obolibrary.org/obo/GO_0051209

Removed

Added

release of sequestered calcium ion into cytosol by Golgi http://purl.obolibrary.org/obo/GO_0061454

Removed

Added

release of sequestered calcium ion into cytosol by endoplasmic reticulum http://purl.obolibrary.org/obo/GO_1903514

Removed

Added

rhamnose transmembrane transport http://purl.obolibrary.org/obo/GO_0015762

Removed

Added

shikimate transmembrane transport http://purl.obolibrary.org/obo/GO_0015733

Removed

Added

sorbitol transmembrane transport http://purl.obolibrary.org/obo/GO_0015795

Removed

Added

spermidine transmembrane transport http://purl.obolibrary.org/obo/GO_1903711

Removed

Added

spermine transmembrane transport http://purl.obolibrary.org/obo/GO_1903710

Removed

Added

sterol transmembrane transport http://purl.obolibrary.org/obo/GO_0035382

Removed

Added

succinate transmembrane transport http://purl.obolibrary.org/obo/GO_0071422

Removed

Added

sucrose transmembrane transport http://purl.obolibrary.org/obo/GO_1904982

Removed

Added

tartrate transmembrane transport http://purl.obolibrary.org/obo/GO_0015745

Removed

Added

tetracycline transmembrane transport http://purl.obolibrary.org/obo/GO_0015904

Removed

Added

thiamine pyrophosphate transmembrane transport http://purl.obolibrary.org/obo/GO_0030974

Removed

Added

thiamine transmembrane transport http://purl.obolibrary.org/obo/GO_0071934

Removed

Added

tricarboxylic acid transmembrane transport http://purl.obolibrary.org/obo/GO_0035674

Removed

Added

triose phosphate transmembrane transport http://purl.obolibrary.org/obo/GO_0035436

Removed

Added

uracil transmembrane transport http://purl.obolibrary.org/obo/GO_1903791

Removed

Added

uronic acid transmembrane transport http://purl.obolibrary.org/obo/GO_0015735

Removed

Added

vacuolar transmembrane transport http://purl.obolibrary.org/obo/GO_0034486

Removed

Added

vitamin A import into cell http://purl.obolibrary.org/obo/GO_0071939

Removed

Added

vitamin transmembrane transport http://purl.obolibrary.org/obo/GO_0035461

Removed

Added

xenobiotic export from cell http://purl.obolibrary.org/obo/GO_0046618

Removed

Added

xenobiotic transmembrane transport http://purl.obolibrary.org/obo/GO_0006855

Removed

Added

xylitol transmembrane transport http://purl.obolibrary.org/obo/GO_1902341

Removed

Added

zinc ion transmembrane transport http://purl.obolibrary.org/obo/GO_0071577

Removed

Added