Closed sjm41 closed 4 days ago
Here's a diff of how these changes impact the classified ontology:
http://purl.obolibrary.org/obo/go.owl
http://purl.obolibrary.org/obo/go/releases/2024-11-21/go.owl
file:/__w/go-ontology/go-ontology/src/ontology/../../reasoned-master.owl/reasoned.owl
file:/__w/go-ontology/go-ontology/src/ontology/../../reasoned-pr.owl/reasoned.owl
http://purl.obolibrary.org/obo/GO_0009052
pentose-phosphate shunt, non-oxidative branch EquivalentTo metabolic process and (has_part some D-ribulose-phosphate 3-epimerase activity) and (has_part some ribose-5-phosphate isomerase activity) and (has_part some transaldolase activity) and (has_part some transketolase activity) and (has primary output some D-glyceraldehyde 3-phosphate(2-)) and (has primary output some D-fructose 6-phosphate) and (has primary input some D-ribulose 5-phosphate(2-))
pentose-phosphate shunt, non-oxidative branch SubClassOf has primary output some D-fructose 6-phosphate
pentose-phosphate shunt, non-oxidative branch EquivalentTo metabolic process and (has_part some D-ribulose-phosphate 3-epimerase activity) and (has_part some ribose-5-phosphate isomerase activity) and (has_part some transaldolase activity) and (has_part some transketolase activity) and (has primary output some beta-D-fructofuranose 6-phosphate(2-)) and (has primary output some D-glyceraldehyde 3-phosphate(2-)) and (has primary input some D-ribulose 5-phosphate(2-))
pentose-phosphate shunt, non-oxidative branch SubClassOf has primary output some beta-D-fructofuranose 6-phosphate(2-)
Here's a diff of how these changes impact the classified ontology:
Ontology comparison
Left
http://purl.obolibrary.org/obo/go.owlhttp://purl.obolibrary.org/obo/go/releases/2024-11-21/go.owlfile:/__w/go-ontology/go-ontology/src/ontology/../../reasoned-master.owl/reasoned.owlRight
http://purl.obolibrary.org/obo/go.owlhttp://purl.obolibrary.org/obo/go/releases/2024-11-21/go.owlfile:/__w/go-ontology/go-ontology/src/ontology/../../reasoned-pr.owl/reasoned.owlOntology imports
Ontology annotations
pentose-phosphate shunt, non-oxidative branch
http://purl.obolibrary.org/obo/GO_0009052Removed
pentose-phosphate shunt, non-oxidative branch EquivalentTo metabolic process and (has_part some D-ribulose-phosphate 3-epimerase activity) and (has_part some ribose-5-phosphate isomerase activity) and (has_part some transaldolase activity) and (has_part some transketolase activity) and (has primary output some D-glyceraldehyde 3-phosphate(2-)) and (has primary output some D-fructose 6-phosphate) and (has primary input some D-ribulose 5-phosphate(2-))
pentose-phosphate shunt, non-oxidative branch SubClassOf has primary output some D-fructose 6-phosphate
Added
pentose-phosphate shunt, non-oxidative branch EquivalentTo metabolic process and (has_part some D-ribulose-phosphate 3-epimerase activity) and (has_part some ribose-5-phosphate isomerase activity) and (has_part some transaldolase activity) and (has_part some transketolase activity) and (has primary output some beta-D-fructofuranose 6-phosphate(2-)) and (has primary output some D-glyceraldehyde 3-phosphate(2-)) and (has primary input some D-ribulose 5-phosphate(2-))
pentose-phosphate shunt, non-oxidative branch SubClassOf has primary output some beta-D-fructofuranose 6-phosphate(2-)