Issue 29264

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Here's a diff of how these changes impact the classified ontology:

Ontology comparison

Left

• Ontology IRI: http://purl.obolibrary.org/obo/go.owl
• Version IRI: http://purl.obolibrary.org/obo/go/releases/2024-11-22/go.owl
• Loaded from: file:/__w/go-ontology/go-ontology/src/ontology/../../reasoned-master.owl/reasoned.owl

Right

• Ontology IRI: http://purl.obolibrary.org/obo/go.owl
• Version IRI: http://purl.obolibrary.org/obo/go/releases/2024-11-22/go.owl
• Loaded from: file:/__w/go-ontology/go-ontology/src/ontology/../../reasoned-pr.owl/reasoned.owl

Ontology imports

Ontology annotations

4-hydroxybenzoate polyprenyltransferase activity http://purl.obolibrary.org/obo/GO_0008412

Added

• 4-hydroxybenzoate polyprenyltransferase activity term tracker item "https://github.com/geneontology/go-ontology/issues/29264"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI)

• 4-hydroxybenzoate polyprenyltransferase activity has_narrow_synonym "4-hydroxybenzoate nonaprenyltransferase activity"

  • database_cross_reference "EC:2.5.1.39"

all-trans-decaprenyl-diphosphate synthase activity http://purl.obolibrary.org/obo/GO_0097269

Added

• all-trans-decaprenyl-diphosphate synthase activity has_broad_synonym "decaprenyl pyrophosphate synthetase activity"

  • database_cross_reference "EC:2.5.1.91"

• all-trans-decaprenyl-diphosphate synthase activity has_broad_synonym "decaprenyl-diphosphate synthase activity"

  • database_cross_reference "EC:2.5.1.91"

• all-trans-decaprenyl-diphosphate synthase activity term tracker item "https://github.com/geneontology/go-ontology/issues/29264"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI)

• all-trans-decaprenyl-diphosphate synthase activity has_broad_synonym "terpenyl pyrophosphate synthetase activity"

  • database_cross_reference "EC:2.5.1.91"

• all-trans-decaprenyl-diphosphate synthase activity has_broad_synonym "trans-prenyltransferase activity"

  • database_cross_reference "EC:2.5.1.91"

• all-trans-decaprenyl-diphosphate synthase activity has_broad_synonym "polyprenylpyrophosphate synthetase activity"

  • database_cross_reference "EC:2.5.1.91"

• all-trans-decaprenyl-diphosphate synthase activity has_broad_synonym "terpenoidallyltransferase activity"

  • database_cross_reference "EC:2.5.1.91"

dehydrodolichyl diphosphate synthase activity http://purl.obolibrary.org/obo/GO_0045547

Removed

• dehydrodolichyl diphosphate synthase activity label "dehydrodolichyl diphosphate synthase activity"

Added

• dehydrodolichyl diphosphate synthase activity label "ditrans,polycis-polyprenyl diphosphate synthase [(2E,6E)-farnesyl diphosphate specific] activity"

• dehydrodolichyl diphosphate synthase activity term tracker item "https://github.com/geneontology/go-ontology/issues/29264"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI)

• dehydrodolichyl diphosphate synthase activity has_exact_synonym "dehydrodolichyl diphosphate synthase activity"

  • database_cross_reference "EC:2.5.1.87"

di-trans,poly-cis-undecaprenyl-diphosphate synthase activity http://purl.obolibrary.org/obo/GO_0008834

Removed

• di-trans,poly-cis-undecaprenyl-diphosphate synthase activity label "di-trans,poly-cis-undecaprenyl-diphosphate synthase activity"

Added

• di-trans,poly-cis-undecaprenyl-diphosphate synthase activity label "ditrans,polycis-undecaprenyl-diphosphate synthase [(2E,6E)-farnesyl-diphosphate specific] activity"

• di-trans,poly-cis-undecaprenyl-diphosphate synthase activity has_exact_synonym "di-trans,poly-cis-undecaprenyl-diphosphate synthase activity"

  • database_cross_reference "EC:2.5.1.31"

• di-trans,poly-cis-undecaprenyl-diphosphate synthase activity term tracker item "https://github.com/geneontology/go-ontology/issues/29264"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI)

dimethylallyltranstransferase activity http://purl.obolibrary.org/obo/GO_0004161

Removed

• dimethylallyltranstransferase activity has_exact_synonym "geranyl diphosphate synthase"

Added

• dimethylallyltranstransferase activity term tracker item "https://github.com/geneontology/go-ontology/issues/29264"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI)

• dimethylallyltranstransferase activity has_exact_synonym "geranyl diphosphate synthase activity"

farnesyltranstransferase activity http://purl.obolibrary.org/obo/GO_0004311

Removed

• farnesyltranstransferase activity label "farnesyltranstransferase activity"

Added

• farnesyltranstransferase activity term tracker item "https://github.com/geneontology/go-ontology/issues/29264"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI)

• farnesyltranstransferase activity label "geranylgeranyl diphosphate synthase activity"

• farnesyltranstransferase activity has_exact_synonym "farnesyltranstransferase activity"

  • database_cross_reference "EC:2.5.1.29"

geranylfarnesyl diphosphate synthase activity http://purl.obolibrary.org/obo/GO_0044687

Added

• geranylfarnesyl diphosphate synthase activity has_exact_synonym "FGPP synthase activity"

  • database_cross_reference "EC:2.5.1.81"

• geranylfarnesyl diphosphate synthase activity term tracker item "https://github.com/geneontology/go-ontology/issues/29264"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI)

geranylgeranylglycerol-phosphate geranylgeranyltransferase activity http://purl.obolibrary.org/obo/GO_0047295

Added

• geranylgeranylglycerol-phosphate geranylgeranyltransferase activity term tracker item "https://github.com/geneontology/go-ontology/issues/29264"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI)

• geranylgeranylglycerol-phosphate geranylgeranyltransferase activity has_exact_synonym "DGGGP synthase activity"

  • database_cross_reference "EC:2.5.1.42"

geranyltranstransferase activity http://purl.obolibrary.org/obo/GO_0004337

Removed

• geranyltranstransferase activity label "geranyltranstransferase activity"

Added

• geranyltranstransferase activity label "(2E,6E)-farnesyl diphosphate synthase activity"

• geranyltranstransferase activity has_exact_synonym "farnesyl diphosphate synthase activity"

• geranyltranstransferase activity has_exact_synonym "geranyltranstransferase activity"

  • database_cross_reference "EC:2.5.1.10"

• geranyltranstransferase activity term tracker item "https://github.com/geneontology/go-ontology/issues/29264"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI)

hexaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific) activity http://purl.obolibrary.org/obo/GO_0036423

Added

• hexaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific) activity has_exact_synonym "HexPS activity"

  • database_cross_reference "EC:2.5.1.83"

• hexaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific) activity term tracker item "https://github.com/geneontology/go-ontology/issues/29264"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI)

homogentisate geranylgeranyltransferase activity http://purl.obolibrary.org/obo/GO_0010356

Added

• homogentisate geranylgeranyltransferase activity has_exact_synonym "HGGT activity"

  • database_cross_reference "EC:2.5.1.116"

• homogentisate geranylgeranyltransferase activity term tracker item "https://github.com/geneontology/go-ontology/issues/29264"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI)

homogentisate phytyltransferase activity http://purl.obolibrary.org/obo/GO_0010176

Added

• homogentisate phytyltransferase activity has_exact_synonym "HPT activity"

  • database_cross_reference "EC:2.5.1.115"

• homogentisate phytyltransferase activity term tracker item "https://github.com/geneontology/go-ontology/issues/29264"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI)

homogentisate solanesyltransferase activity http://purl.obolibrary.org/obo/GO_0010357

Added

• homogentisate solanesyltransferase activity has_exact_synonym "HST activity"

  • database_cross_reference "EC:2.5.1.117"

• homogentisate solanesyltransferase activity term tracker item "https://github.com/geneontology/go-ontology/issues/29264"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI)

octaprenyl pyrophosphate synthase activity http://purl.obolibrary.org/obo/GO_0106350

Removed

• octaprenyl pyrophosphate synthase activity label "octaprenyl pyrophosphate synthase activity"

Added

• octaprenyl pyrophosphate synthase activity label "all-trans-octaprenyl-diphosphate synthase activity"

• octaprenyl pyrophosphate synthase activity has_broad_synonym "trans-prenyltransferase activity"

  • database_cross_reference "EC:2.5.1.90"

• octaprenyl pyrophosphate synthase activity term tracker item "https://github.com/geneontology/go-ontology/issues/29264"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI)

• octaprenyl pyrophosphate synthase activity has_exact_synonym "octaprenyl pyrophosphate synthase activity"

  • database_cross_reference "EC:2.5.1.90"

• octaprenyl pyrophosphate synthase activity has_broad_synonym "terpenyl pyrophosphate synthetase activity"

  • database_cross_reference "EC:2.5.1.90"

• octaprenyl pyrophosphate synthase activity has_exact_synonym "trans-heptaprenyltranstransferase activity"

  • database_cross_reference "EC:2.5.1.90"

phosphoglycerol geranylgeranyltransferase activity http://purl.obolibrary.org/obo/GO_0047294

Added

• phosphoglycerol geranylgeranyltransferase activity has_exact_synonym "GGGPS activity"

  • database_cross_reference "EC:2.5.1.41"

• phosphoglycerol geranylgeranyltransferase activity term tracker item "https://github.com/geneontology/go-ontology/issues/29264"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI)

• phosphoglycerol geranylgeranyltransferase activity has_exact_synonym "GGGP synthase activity"

  • database_cross_reference "EC:2.5.1.41"

squalene synthase [NAD(P)H] activity http://purl.obolibrary.org/obo/GO_0051996

Added

• squalene synthase [NAD(P)H] activity has_exact_synonym "squalene synthase activity"

  • database_cross_reference "EC:2.5.1.21"

• squalene synthase [NAD(P)H] activity has_exact_synonym "presqualene-diphosphate synthase activity"

  • database_cross_reference "EC:2.5.1.21"

• squalene synthase [NAD(P)H] activity has_narrow_synonym "farnesyl-diphosphate farnesyltransferase activity"

  • database_cross_reference "EC:2.5.1.21"

• squalene synthase [NAD(P)H] activity has_exact_synonym "presqualene synthase activity"

  • database_cross_reference "EC:2.5.1.21"

• squalene synthase [NAD(P)H] activity has_broad_synonym "farnesyltransferase activity"

  • database_cross_reference "EC:2.5.1.21"

• squalene synthase [NAD(P)H] activity term tracker item "https://github.com/geneontology/go-ontology/issues/29264"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI)