detailed lateral line terms

[gocentral]

I've attempted to attach an obo file encompassing our lateral line term proposal. It is fairly detailed. MOST (not all) of the terms in the obo file are new terms. The higher level terms in this proposal which already exist in GO were added to help clarify the structure, and were added to this OBO file with just their name and their GO ID as part of their name....

I've also included an xls spreadsheet which shows the requested is_a links from the new terms to terms already existing in GO.

I'll try attaching the files now....

-Doug

Reported by: doughowe

Original Ticket: "geneontology/ontology-requests/3510":https://sourceforge.net/p/geneontology/ontology-requests/3510

[gocentral]

lateral line proposal

Original comment by: doughowe

[gocentral]

Logged In: YES user_id=835115

Here is the lateral line obo file...

Original comment by: doughowe

[gocentral]

lateral line is_a paths

Original comment by: doughowe

[gocentral]

Logged In: YES user_id=835115

here is the xls file with the is_a parents...

Original comment by: doughowe

[gocentral]

Logged In: YES user_id=735846

Wow! It's like cns all over again. :-) You did a lot of work.

I go to meetings in Seattle on Tuesday and I have to write my talk today and Monday. Can we leave these for review 'till I get back from Seattle and then I'll put them into the file the same way I did with the cns terms?

Do you want to write to the development interest group list to ask people to take a look if this is in their line?

Thanks,

Jen

Original comment by: jenclark

[gocentral]

• assigned_to: nobody --> jenclark

Original comment by: jenclark

[gocentral]

Logged In: YES user_id=835115

Jen, Yes, I'll post a request to the dev. list to have a look at this proposal, and we can move towards implementation in the next couple of weeks. The lateral line turned out to be far more complex to model "properly" than was originally thought, so several curators here contributed to the development of the proposal. I guess if its worth doing..its worth doing properly!

-Doug, Yvonne, Dave and Melissa

Original comment by: doughowe

[gocentral]

Logged In: YES user_id=735846

Hi Doug,

Yes it's great that you've done it so comprehensively. Good idea to use the same submission system as with cns as well. Hopefully the merge will be smoother with this smaller set of terms. Did you need to alter anything with in the existing graph or have you just added new terms? It will be much easier for me to merge if I know this.

Thanks,

Jen

Original comment by: jenclark

[gocentral]

Logged In: YES user_id=835115

The proposal is strictly to add new terms. However, to get it all straight, I put some existing terms in the attached OBO file..so don't be fooled by these! You can tell which terms already exist in the GO because they have their GO ID in the term name, and they have no defs etc...they are just term stubs. I think the ones that are already in GO are just at the top of the graph...nothing hiding down low I don't think. -Doug

Original comment by: doughowe

[gocentral]

Logged In: YES user_id=735846

Hi Doug,

Sorry for the delay. These terms have been added now. If you want to use that submission system again that would be great. Would it be possible to leave the hyphens out of ISBN numbers in future? Thanks.

I haven't made this is_a complete yet but I'll give the excel file to Amelia as she has a script to put relationships in and so can do it very quickly.

Here are the terms:

id: GO:0048880 name: sensory system development namespace: biological_process def: "The process whose specific outcome is the progression of a sensory system over time from its formation to the mature structure." [GOC:dgh] is_a: GO:0048731 ! system development

[Term] id: GO:0048881 name: mechanosensory lateral line system development namespace: biological_process def: "The process whose specific outcome is the progression of the mechanosensory lateral line system over time, from its formation to the mature structure. The mechanosensory lateral line system consists of small sensory patches (neuromasts) located superficially on the skin or just under the skin in fluid-filled canals on the head and body of all fishes and most amphibians. The neuromasts are innervated by several lateral line nerves, which project primarily to the hindbrain. The mechanosensory lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance." [ISBN:0-12-529650-9] exact_synonym: "LL system development" [ISBN:0-12-529650-9] is_a: GO:0048925 ! lateral line system development

[Term] id: GO:0048882 name: lateral line development namespace: biological_process def: "The process whose specific outcome is the progression of the lateral line over time, from its formation to the mature structure. The lateral line consists of small sensory patches (neuromasts) located superficially on the skin or just under the skin in fluid-filled canals on the head and body of all fishes and most amphibians. The lateral line develops from cranial ectodermal placodes situated behind the ear and between the eye and ear." [ISBN:0-12-529650-9] exact_synonym: "LL development" [] relationship: part_of GO:0048925 ! lateral line system development

[Term] id: GO:0048883 name: neuromast primordium migration namespace: biological_process def: "The migration of a cluster of relatively undifferentiated cells originating at specific cephalic placodes and depositing proneuromasts along a developing lateral line, from which the neuromasts will develop" [PMID:15018940, PMID:15832385] related_synonym: "" [] exact_synonym: "lateral line primordium migration" [] relationship: part_of GO:0048882 ! lateral line development

[Term] id: GO:0048884 name: neuromast development namespace: biological_process def: "The process whose specific outcome is the progression of the neuromast over time, from its formation to the mature structure. The neuromast is the sensory organ of the lateral line and is composed of a population of sensory hair cells, and nonsensory supporting cells and mantle cells. Neuromasts are located superficially on the epithelium or in lateral line canals." [ISBN:0-12-529650-9] relationship: part_of GO:0048882 ! lateral line development

[Term] id: GO:0048885 name: neuromast deposition namespace: biological_process def: "The process by which a migrating neuromast primordium deposits clusters of undifferentiated cells (proneuromasts) along its migratory path in a developing lateral line." [PMID:15018940] relationship: part_of GO:0048884 ! neuromast development

[Term] id: GO:0048886 name: neuromast hair cell differentiation namespace: biological_process def: "The process whereby a relatively unspecialized cell acquires specialized features of a neuromast hair cell. Hair cells are the sensory receptors of the neuromast and are located in a portion of the neuromast called the sensory strip. Each hair cell of the neuromast is morphologically polarized as a result of the relative position of the single kinocilium and the clusters of stereocilia on its apical surface. There are approximately seven hair cells within each neuromast, with each hair cell innervated by afferent and efferent neurons." [ISBN:0-12-529650-9] relationship: part_of GO:0048884 ! neuromast development

[Term] id: GO:0048887 name: cupula development namespace: biological_process def: "The process whose specific outcome is the progression of the cupula over time, from its formation to the mature structure. The cupula is secreted by mantle cells and the ciliary bundles of all of the hair cells of the neuromast are embedded in it. The cupula provides a mechanical linkage between the hair cells and the external hydrodynamic environment. The cupula of superficial neuromasts grows continuously, while the height of the cupula of canal neuromasts is limited by canal diameter." [ISBN:0-12-529650-9] relationship: part_of GO:0048884 ! neuromast development

[Term] id: GO:0048888 name: neuromast mantle cell differentiation namespace: biological_process def: "The process whereby a relatively unspecialized cell acquires specialized features of a neuromast mantle cell. Mantle cells are non-sensory cells that surround the sensory strip, separating the neuromast from the epidermis. Mantle cells secrete the cupula in which the ciliary bundles of all of the hair cells are embedded." [ISBN:0-12-529650-9] relationship: part_of GO:0048884 ! neuromast development

[Term] id: GO:0048889 name: neuromast support cell differentiation namespace: biological_process def: "The process whereby a relatively unspecialized cell acquires specialized features of a neuromast support cell. Support cells are non-sensory cells of the neuromast that extend between the sensory hair cells from the basement membrane to the apical surface; they are surrounded by mantle cells." [ISBN:0-12-529650-9] relationship: part_of GO:0048884 ! neuromast development

[Term] id: GO:0048890 name: lateral line ganglion development namespace: biological_process def: "The process whose specific outcome is the progression of the lateral line ganglion over time, from its formation to the mature structure. The lateral line ganglion develops from cranial ectodermal placodes situated between the eye and ear and behind the ear." [ISBN:0-12-529650-9, ISBN:0-387-96837-7] exact_synonym: "gLL ganglion development" [] relationship: part_of GO:0007422 ! peripheral nervous system development relationship: part_of GO:0048925 ! lateral line system development

[Term] id: GO:0048891 name: lateral line ganglion neuron differentiation namespace: biological_process def: "The process whereby a relatively unspecialized cell acquires specialized features of a lateral line ganglion neuron." [PMID:15018940] exact_synonym: "gLL neuron differentiation" [] is_a: GO:0048934 ! peripheral nervous system neuron differentiation relationship: part_of GO:0048890 ! lateral line ganglion development

[Term] id: GO:0048892 name: lateral line nerve development namespace: biological_process def: "The process whose specific outcome is the progression of the lateral line nerve over time, form its formation to the mature structure. Lateral line nerves project primarily to an octavolateralis column in the hindbrain that consists of the medial octavolateralis nucleus (MON), the caudal octavolateralis nucleus, and the magnocellular nucleus." [ISBN:0-12-529650-9] exact_synonym: "nLL development" [] is_a: GO:0021545 ! cranial nerve development relationship: part_of GO:0048925 ! lateral line system development

[Term] id: GO:0048893 name: afferent axon development in a lateral line nerve namespace: biological_process def: "The process whose specific outcome is the progression of an afferent axon in a lateral line nerve over time from its formation to the mature structure. This process includes axonogenesis and pathfinding of the afferent axons in any lateral line nerve." [PMID:15832385] is_a: GO:0048936 ! peripheral nervous system neuron axonogenesis relationship: part_of GO:0048892 ! lateral line nerve development

[Term] id: GO:0048894 name: efferent axon development in a lateral line nerve namespace: biological_process def: "The process whose specific outcome is the progression of an efferent axon in a lateral line nerve over time from its formation to the mature structure. This process includes axonogenesis and pathfinding of the efferent axons in any lateral line nerve." [PMID:15832385] is_a: GO:0021955 ! central nervous system neuron axonogenesis relationship: part_of GO:0048892 ! lateral line nerve development

[Term] id: GO:0048895 name: lateral line nerve glial cell differentiation namespace: biological_process def: "The process whereby a relatively unspecialized cell acquires specialized features of a glial cell in a lateral line nerve." [PMID:12062041] relationship: part_of GO:0048892 ! lateral line nerve development

[Term] id: GO:0048896 name: glial cell migration in a lateral line nerve namespace: biological_process def: "The movement of glial cells along the axons in a lateral line nerve. " [PMID:12062041] relationship: part_of GO:0048892 ! lateral line nerve development

[Term] id: GO:0048897 name: myelination of lateral line nerve axons namespace: biological_process def: "The formation of compact myelin sheaths around the axons of a lateral line nerve." [PMID:12112375] relationship: part_of GO:0048938 ! lateral line nerve glial cell morphogenesis during differentiation

[Term] id: GO:0048898 name: anterior lateral line system development namespace: biological_process def: "The process whose specific outcome is the progression of the anterior lateral line system over time, from its formation to the mature structure. The anterior lateral line system develops from cranial ectodermal placodes, situated between the eye and the ear, that give rise to both the neuromasts and the anterior lateral line sensory nerves that innervate the neuromasts. The anterior lateral line system consists of small sensory patches (neuromasts) located superficially on the skin or just under the skin in fluid-filled canals on the head of all fishes and most amphibians and are innervated by several lateral line nerves, which project to the hindbrain. The anterior lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance." [ISBN:0-12-529650-9] related_synonym: "ALL" [] xref_analog: PMID:15018940 is_a: GO:0048925 ! lateral line system development relationship: part_of GO:0048881 ! mechanosensory lateral line system development

[Term] id: GO:0048899 name: anterior lateral line development namespace: biological_process def: "The process whose specific outcome is the progression of the anterior lateral line over time, from its formation to the mature structure. The anterior lateral line consists of small sensory patches (neuromasts) located superficially on the skin or just under the skin in fluid-filled canals on the head of all fishes and most amphibians. The anterior lateral line develops from cranial ectodermal placodes situated between the eye and ear." [ISBN:0-12-529650-9] exact_synonym: "anterior LL development" [] is_a: GO:0048882 ! lateral line development relationship: part_of GO:0048898 ! anterior lateral line system development

[Term] id: GO:0048900 name: anterior lateral line neuromast primordium migration namespace: biological_process def: "The migration of a cluster of relatively undifferentiated cells along the developing anterior lateral line, originating from cranial ectodermal placodes situated between the eye and the ear. The neuromast primordium deposits proneuromasts along the lateral line, from which the neuromasts will develop." [GOC:dgh, PMID:15832385] exact_synonym: "ALL neuromast primordium migration" [] is_a: GO:0048883 ! neuromast primordium migration relationship: part_of GO:0048899 ! anterior lateral line development

[Term] id: GO:0048901 name: anterior lateral line neuromast development namespace: biological_process def: "The process whose specific outcome is the progression of the anterior lateral line neuromast over time, from its formation to the mature structure. The neuromast is the sensory receptor of the anterior lateral line system and is composed of a population of sensory hair cells, and nonsensory supporting cells and mantle cells. Neuromast are located superficially on the epithelium or in lateral line canals." [ISBN:0-12-529650-9] is_a: GO:0048884 ! neuromast development relationship: part_of GO:0048899 ! anterior lateral line development

[Term] id: GO:0048902 name: anterior lateral line neuromast deposition namespace: biological_process def: "The process by which a migrating neuromast primordium deposits clusters of undifferentiated cells (proneuromasts) along its migratory path in the developing anterior lateral line." [PMID:15832385] is_a: GO:0048885 ! neuromast deposition relationship: part_of GO:0048901 ! anterior lateral line neuromast development

[Term] id: GO:0048903 name: anterior lateral line neuromast hair cell differentiation namespace: biological_process def: "The process whereby a relatively unspecialized cell acquires specialized features of a neuromast hair cell. Neuromast hair cells are the sensory receptors of the neuromast and are located in a portion of the neuromast called the sensory strip. Each hair cell of the neuromast is morphologically polarized as a result of the relative position of the single kinocilium and the clusters of stereocilia on its apical surface. There are approximately seven hair cells within each neuromast, with each hair cell innervated by afferent and efferent neurons." [ISBN:0-12-529650-9, ISBN:0-387-96837-7] is_a: GO:0048886 ! neuromast hair cell differentiation relationship: part_of GO:0048901 ! anterior lateral line neuromast development

[Term] id: GO:0048904 name: anterior lateral line neuromast cupula development namespace: biological_process def: "The process whose specific outcome is the progression of the anterior lateral line neuromast cupula over time, from its formation to the mature structure. The cupula is secreted by mantle cells and the ciliary bundles of all of the hair cells of the neuromast are embedded in it. The cupula provides a mechanical linkage between the hair cells and the external hydrodynamic environment. The cupula of superficial neuromasts grows continuously, while the height of the cupula of canal neuromasts is limited by canal diameter." [ISBN:0-12-529650-9] is_a: GO:0048887 ! cupula development relationship: part_of GO:0048901 ! anterior lateral line neuromast development

[Term] id: GO:0048905 name: anterior lateral line neuromast mantle cell differentiation namespace: biological_process def: "The process whereby a relatively unspecialized cell acquires specialized features of a neuromast mantle cell. Mantle cells are non-sensory cells that surround the sensory strip, separating the neuromast from the epidermis. Mantle cells secrete the cupula in which the ciliary bundles of all of the hair cells are embedded." [ISBN:0-12-529650-9] is_a: GO:0048888 ! neuromast mantle cell differentiation relationship: part_of GO:0048901 ! anterior lateral line neuromast development

[Term] id: GO:0048906 name: anterior lateral line neuromast support cell differentiation namespace: biological_process def: "The process whereby a relatively unspecialized cell acquires specialized features of an anterior lateral line neuromast support cell. Support cells are non-sensory cells of the neuromast that extend between the sensory hair cells from the basement membrane to the apical surface; they are surrounded by mantle cells." [ISBN:0-387-96837-7] is_a: GO:0048889 ! neuromast support cell differentiation relationship: part_of GO:0048901 ! anterior lateral line neuromast development

[Term] id: GO:0048907 name: anterior lateral line ganglion development namespace: biological_process def: "The process whose specific outcome is the progression of the anterior lateral line ganglion over time, from its formation to the mature structure. The anterior lateral line ganglion develops from cranial ectodermal placodes situated between the eye and ear." [ISBN:0-12-529650-9] exact_synonym: "gALL development" [] is_a: GO:0048890 ! lateral line ganglion development relationship: part_of GO:0048898 ! anterior lateral line system development

[Term] id: GO:0048908 name: anterior lateral line ganglion neuron differentiation namespace: biological_process def: "The process whereby a relatively unspecialized cell acquires specialized features of a neuron of the anterior lateral line ganglion." [PMID:15018940] is_a: GO:0048891 ! lateral line ganglion neuron differentiation relationship: part_of GO:0048907 ! anterior lateral line ganglion development

[Term] id: GO:0048909 name: anterior lateral line nerve development namespace: biological_process def: "The process whose specific outcome is the progression of the anterior lateral line nerve over time, form its formation to the mature structure. The anterior lateral line nerve contains efferent axons that innervate hair cells of the ALL and afferent axons that project to an octavolateralis column in the hindbrain. The octavolateralis column consists of the medial octavolateralis nucleus (MON), the caudal octavolateralis nucleus, and the magnocellular nucleus." [ISBN:0-12-529650-9] exact_synonym: "nALL development" [] is_a: GO:0048892 ! lateral line nerve development relationship: part_of GO:0048898 ! anterior lateral line system development

[Term] id: GO:0048910 name: afferent axon development in the anterior lateral line nerve namespace: biological_process def: "The process whose specific outcome is the progression of an afferent axon in the anterior lateral line nerve over time from its formation to the mature structure. This process includes axonogenesis and pathfinding of the afferent axons in the anterior lateral line nerve. " [PMID:15018940] is_a: GO:0048893 ! afferent axon development in a lateral line nerve relationship: part_of GO:0048909 ! anterior lateral line nerve development

[Term] id: GO:0048911 name: efferent axon development in the anterior lateral line nerve namespace: biological_process def: "The process whose specific outcome is the progression of an efferent axon in the anterior lateral line nerve over time from its formation to the mature structure. This process includes axonogenesis and pathfinding of the efferent axons in the anterior lateral line nerve." [PMID:15018940] is_a: GO:0048894 ! efferent axon development in a lateral line nerve relationship: part_of GO:0048909 ! anterior lateral line nerve development

[Term] id: GO:0048912 name: glial cell migration in the anterior lateral line nerve namespace: biological_process def: "The movement of glial cells along the axons in the anterior lateral line nerve. " [PMID:12062041] is_a: GO:0048896 ! glial cell migration in a lateral line nerve relationship: part_of GO:0048909 ! anterior lateral line nerve development

[Term] id: GO:0048913 name: anterior lateral line nerve glial cell differentiation namespace: biological_process def: "The process whereby a relatively unspecialized cell acquires specialized features of a glial cell in the anterior lateral line nerve." [PMID:15832385] is_a: GO:0048895 ! lateral line nerve glial cell differentiation relationship: part_of GO:0048909 ! anterior lateral line nerve development

[Term] id: GO:0048914 name: myelination of anterior lateral line nerve axons namespace: biological_process def: "The formation of compact myelin sheaths around the axons of the anterior lateral line nerve." [PMID:12112375] is_a: GO:0048897 ! myelination of lateral line nerve axons relationship: part_of GO:0048940 ! anterior lateral line nerve glial cell morphogenesis during differentiation

[Term] id: GO:0048915 name: posterior lateral line system development namespace: biological_process def: "The process whose specific outcome is the progression of the posterior lateral line system over time, from its formation to the mature structure. The posterior lateral line system develops from cranial ectodermal placodes, situated behind the ear, that give rise to both the neuromasts and the posterior lateral line sensory nerves that innervate the neuromasts. The posterior lateral line system consists of small sensory patches (neuromasts) located superficially on the skin or just under the skin in fluid-filled canals on the head of all fishes and most amphibians. The neuromasts are innervated by several lateral line nerves, which project primarily to the hindbrain. The posterior mechanosensory lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance." [ISBN:0-12-529650-9] related_synonym: "PLL" [] xref_analog: PMID:15018940 is_a: GO:0048925 ! lateral line system development relationship: part_of GO:0048881 ! mechanosensory lateral line system development

[Term] id: GO:0048916 name: posterior lateral line development namespace: biological_process def: "The process whose specific outcome is the progression of the posterior lateral line over time, from its formation to the mature structure. The posterior lateral line consists of small sensory patches (neuromasts) located superficially on the skin or just under the skin in fluid-filled canals on the body and trunk of all fishes and most amphibians. The posterior lateral line develops from cranial ectodermal placodes situated behind the ear." [ISBN:0-12-529650-9] exact_synonym: "PLL development" [] is_a: GO:0048882 ! lateral line development relationship: part_of GO:0048915 ! posterior lateral line system development

[Term] id: GO:0048917 name: posterior lateral line ganglion development namespace: biological_process def: "The process whose specific outcome is the progression of the posterior lateral line ganglion over time, from its formation to the mature structure. The posterior lateral line ganglion develops from cranial ectodermal placodes situated behind the ear." [ISBN:0-12-529650-9, ISBN:0-387-96837-7] exact_synonym: "gPLL development" [] is_a: GO:0048890 ! lateral line ganglion development relationship: part_of GO:0048915 ! posterior lateral line system development

[Term] id: GO:0048918 name: posterior lateral line nerve development namespace: biological_process def: "The process whose specific outcome is the progression of the posterior lateral line nerve over time, form its formation to the mature structure. The posterior lateral line nerve innervates hair cells of the PLL and projects to an octavolateralis column in the hindbrain that consists of the medial octavolateralis nucleus (MON), the caudal octavolateralis nucleus, and the magnocellular nucleus." [ISBN:0-12-529650-9] is_a: GO:0048892 ! lateral line nerve development relationship: part_of GO:0048915 ! posterior lateral line system development

[Term] id: GO:0048919 name: posterior lateral line neuromast development namespace: biological_process def: "The process whose specific outcome is the progression of the posterior lateral line neuromast over time, from its formation to the mature structure. The neuromast is the sensory receptor of the anterior lateral line system and is composed of a population of sensory hair cells, and nonsensory supporting cells and mantle cells. Neuromast are located superficially on the epithelium or in lateral line canals." [ISBN:0-12-529650-9] is_a: GO:0048884 ! neuromast development relationship: part_of GO:0048916 ! posterior lateral line development

[Term] id: GO:0048920 name: posterior lateral line neuromast primordium migration namespace: biological_process def: "The migration of a cluster of relatively undifferentiated cells along the developing posterior lateral line, originating from cranial ectodermal placodes situated behind the ear. The neuromast primordium deposits proneuromasts along the lateral line, from which the neuromasts will develop." [GOC:dgh, PMID:15832385] exact_synonym: "PLL neuromast primordium migration" [] is_a: GO:0048883 ! neuromast primordium migration relationship: part_of GO:0048916 ! posterior lateral line development

[Term] id: GO:0048921 name: posterior lateral line neuromast cupula development namespace: biological_process def: "The process whose specific outcome is the progression of the posterior lateral line neuromast cupula over time, from its formation to the mature structure. The cupula is secreted by mantle cells and the ciliary bundles of all of the hair cells of the neuromast are embedded in it. The cupula provides a mechanical linkage between the hair cells and the external hydrodynamic environment. The cupula of superficial neuromasts grows continuously, while the height of the cupula of canal neuromasts is limited by canal diameter." [ISBN:0-12-529650-9] is_a: GO:0048887 ! cupula development relationship: part_of GO:0048919 ! posterior lateral line neuromast development

[Term] id: GO:0048922 name: posterior lateral line neuromast deposition namespace: biological_process def: "The process by which a migrating neuromast primordium deposits clusters of undifferentiated cells (proneuromasts) along its migratory path in the developing posterior lateral line." [PMID:15832385] is_a: GO:0048885 ! neuromast deposition relationship: part_of GO:0048919 ! posterior lateral line neuromast development

[Term] id: GO:0048923 name: posterior lateral line neuromast hair cell differentiation namespace: biological_process def: "The process whereby a relatively unspecialized cell acquires specialized features of a posterior lateral line neuromast hair cell. (N.B. This may be development of neuromast hair cell type or a set of cell of neuromast hair cell type. This will involve the change of a cell or set of cells from one cell identity to another). Hair cells are the sensory receptors of the neuromast and are located in a portion of the neuromast called the sensory strip. Each hair cell of the neuromast is morphologically polarized as a result of the relative position of the single kinocilium and the clusters of stereocilia on its apical surface. There are approximately seven hair cells within each neuromast, with each hair cell innervated by afferent and efferent neurons." [ISBN:0-12-529650-9] is_a: GO:0048886 ! neuromast hair cell differentiation relationship: part_of GO:0048919 ! posterior lateral line neuromast development

[Term] id: GO:0048924 name: posterior lateral line neuromast mantle cell differentiation namespace: biological_process def: "The process whereby a relatively unspecialized cell acquires specialized features of a posterior lateral line neuromast mantle cell. (N.B. This may be development of neuromast mantle cell type or a set of cells of neuromast mantle cell type. This will involve the change of a cell or set of cells from one cell identity to another). Mantle cells are non-sensory cells that surround the sensory strip, separating the neuromast from the epidermis. Mantle cells secrete the cupula in which the ciliary bundles of all of the hair cells are embedded." [ISBN:0-12-529650-9] is_a: GO:0048888 ! neuromast mantle cell differentiation relationship: part_of GO:0048919 ! posterior lateral line neuromast development

[Term] id: GO:0048925 name: lateral line system development namespace: biological_process def: "The process whose specific outcome is the progression of the lateral line system over time, from its formation to the mature structure. The lateral line system is a network of sensory organs (neuromasts) and lateral line nerves located superficially on the skin or just under the skin in fluid-filled canals on the head and body of all fishes and most amphibians. The lateral line system develops from cranial ectodermal placodes situated between the eye and ear." [GOC:dgh, ISBN:0-12-529650-9] is_a: GO:0048880 ! sensory system development

[Term] id: GO:0048926 name: electrosensory lateral line system development namespace: biological_process def: "The process whose specific outcome is the progression of the electrosensory lateral line system over time, from its formation to the mature structure." [GOC:dgh] is_a: GO:0048925 ! lateral line system development

[Term] id: GO:0048927 name: posterior lateral line neuromast support cell differentiation namespace: biological_process def: "The process whereby a relatively unspecialized cell acquires specialized features of a posterior lateral line neuromast support cell. Support cells are non-sensory cells of the neuromast that extend between the sensory hair cells from the basement membrane to the apical surface; they are surrounded by mantle cells." [ISBN:0-387-96837-7] is_a: GO:0048889 ! neuromast support cell differentiation relationship: part_of GO:0048919 ! posterior lateral line neuromast development

[Term] id: GO:0048928 name: posterior lateral line ganglion neuron differentiation namespace: biological_process def: "The process whereby a relatively unspecialized cell acquires specialized features of a neuron of the posterior lateral line ganglion." [PMID:15018940] is_a: GO:0048891 ! lateral line ganglion neuron differentiation relationship: part_of GO:0048917 ! posterior lateral line ganglion development

[Term] id: GO:0048929 name: efferent axon development in the posterior lateral line nerve namespace: biological_process def: "The process whose specific outcome is the progression of an efferent axon in the posterior lateral line nerve over time from its formation to the mature structure. This process includes axonogenesis and pathfinding of the efferent axons in the posterior lateral line nerve." [PMID:15018940] is_a: GO:0048894 ! efferent axon development in a lateral line nerve relationship: part_of GO:0048918 ! posterior lateral line nerve development

[Term] id: GO:0048930 name: glial cell migration in the posterior lateral line nerve namespace: biological_process def: "The movement of glial cells along the axons in the posterior lateral line nerve. " [PMID:12062041] is_a: GO:0048896 ! glial cell migration in a lateral line nerve relationship: part_of GO:0048918 ! posterior lateral line nerve development

[Term] id: GO:0048931 name: posterior lateral line nerve glial cell differentiation namespace: biological_process def: "The process whereby a relatively unspecialized cell acquires specialized features of a glial cell in the posterior lateral line nerve." [PMID:15832385] is_a: GO:0048895 ! lateral line nerve glial cell differentiation relationship: part_of GO:0048918 ! posterior lateral line nerve development

[Term] id: GO:0048932 name: myelination of posterior lateral line nerve axons namespace: biological_process def: "The formation of compact myelin sheaths around the axons of the posterior lateral line nerve." [PMID:12112375] is_a: GO:0048897 ! myelination of lateral line nerve axons relationship: part_of GO:0048942 ! posterior lateral line nerve glial cell morphogenesis during differentiation

[Term] id: GO:0048933 name: afferent axon development in the posterior lateral line nerve namespace: biological_process def: "The process whose specific outcome is the progression of an afferent axon in the posterior lateral line nerve over time from its formation to the mature structure. This process includes axonogenesis and pathfinding of the afferent axons in the posterior lateral line nerve." [PMID:15018940] is_a: GO:0048893 ! afferent axon development in a lateral line nerve relationship: part_of GO:0048918 ! posterior lateral line nerve development

[Term] id: GO:0048934 name: peripheral nervous system neuron differentiation namespace: biological_process def: "The process whereby a relatively unspecialized cell acquires specialized features of a neuron whose cell body resides in the peripheral nervous system." [GOC:dgh] relationship: part_of GO:0007422 ! peripheral nervous system development

[Term] id: GO:0048935 name: peripheral nervous system neuron development namespace: biological_process def: "The process whose specific outcome is the progression of a neuron whose cell body is located in the peripheral nervous system, from initial commitment of the cell to a neuronal fate, to the fully functional differentiated neuron." [GOC:dgh] relationship: part_of GO:0048934 ! peripheral nervous system neuron differentiation

[Term] id: GO:0048936 name: peripheral nervous system neuron axonogenesis namespace: biological_process def: "Generation of a long process from a neuron whose cell body resides in the peripheral nervous system. The axon carries action potential from the cell body towards target cells." [GOC:dgh] relationship: part_of GO:0048935 ! peripheral nervous system neuron development

[Term] id: GO:0048937 name: lateral line nerve glial cell development namespace: biological_process def: "The process aimed at the progression of a lateral line glial cell over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell." [GOC:dgh] relationship: part_of GO:0048895 ! lateral line nerve glial cell differentiation

[Term] id: GO:0048938 name: lateral line nerve glial cell morphogenesis during differentiation namespace: biological_process def: "The process by which the structure of a glial cell in a lateral line nerve is generated and organized. This process occurs while the initally relatively unspecialized cell is acquiring the specialized features of a glial cell in a lateral line nerve." [GOC:dgh] relationship: part_of GO:0048937 ! lateral line nerve glial cell development

[Term] id: GO:0048939 name: anterior lateral line nerve glial cell development namespace: biological_process def: "The process aimed at the progression of a glial cell in the anterior lateral line nerve over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell." [GOC:dgh] is_a: GO:0048937 ! lateral line nerve glial cell development relationship: part_of GO:0048913 ! anterior lateral line nerve glial cell differentiation

[Term] id: GO:0048940 name: anterior lateral line nerve glial cell morphogenesis during differentiation namespace: biological_process def: "The process by which the structures of a glial cell in the anterior lateral line nerve are generated and organized. This process occurs while the initally relatively unspecialized cell is acquiring the specialized features of a glial cell in the anterior lateral line nerve." [GOC:dgh] is_a: GO:0048938 ! lateral line nerve glial cell morphogenesis during differentiation relationship: part_of GO:0048939 ! anterior lateral line nerve glial cell development

[Term] id: GO:0048941 name: posterior lateral line nerve glial cell development namespace: biological_process def: "The process aimed at the progression of a glial cell in the posterior lateral line nerve over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell." [GOC:dgh] is_a: GO:0048937 ! lateral line nerve glial cell development relationship: part_of GO:0048931 ! posterior lateral line nerve glial cell differentiation

[Term] id: GO:0048942 name: posterior lateral line nerve glial cell morphogenesis during differentiation namespace: biological_process def: "The process by which the structures of a glial cell in the posterior lateral line nerve are generated and organized. This process occurs while the initally relatively unspecialized cell is acquiring the specialized features of a glial cell in the posterior lateral line nerve." [GOC:dgh] is_a: GO:0048938 ! lateral line nerve glial cell morphogenesis during differentiation relationship: part_of GO:0048941 ! posterior lateral line nerve glial cell development Ta.

Jen

Original comment by: jenclark

[gocentral]

Logged In: YES user_id=735846

Amelia has put the is_a links in now so this item is finished.

Thanks,

Jen

Original comment by: jenclark

[gocentral]

• status: open --> closed-accepted

Original comment by: jenclark

[gocentral]

• assigned_to: Jennifer Deegan --> nobody
• Group: Plant Ontology --> None

Original comment by: cooperl09