16 missing links in BP (from BP-CC xps)

[gocentral]

see also:

go/scratch/xps/biological_process_xp_cellular_component.obo

(This file is currently curated by me - if any of the inferences below are wrong I will amend the xp defs ensuring the erroneous inference won't show up again)

"mitochondrial DNA repair" [GO:0043504] is_a "mitochondrial DNA metabolic process" [GO:0032042] "cell-cell junction assembly and maintenance" [GO:0045216] is_a "cell-cell junction assembly" [GO:0007043] "proteolysis within lysosome associated with antigen processing and presentation" [GO:0002500] is_a "vacuolar protein catabolic process" [GO:0007039] "nucleosome assembly" [GO:0006334] is_a "protein complex assembly" [GO:0006461] "carnitine shuttle" [GO:0006853] is_a "intracellular lipid transport" [GO:0032365] "lysosomal transport" [GO:0007041] is_a "vacuolar transport" [GO:0007034] "mitochondrial rRNA export from mitochondrion" [GO:0019090] is_a "mitochondrial transport" [GO:0006839] "microvillus biogenesis" [GO:0030033] is_a "cell projection biogenesis" [GO:0030031] "oral apparatus organization and biogenesis" [GO:0032122] is_a "cell projection organization and biogenesis" [GO:0030030] "contractile vacuole organization and biogenesis" [GO:0033298] is_a "vacuole organization and biogenesis" [GO:0007033] "dosage compensation complex assembly" [GO:0042714] is_a "protein complex assembly" [GO:0006461] "Golgi to plasma membrane protein transport" [GO:0043001] is_a "intracellular protein transport" [GO:0006886] "clathrin cage assembly" [GO:0048268] is_a "protein complex assembly" [GO:0006461] "pigment granule organization and biogenesis" [GO:0048753] is_a "vesicle organization and biogenesis" [GO:0016050] "microtubule nucleation by spindle pole body" [GO:0051417] is_a "microtubule nucleation by microtubule organizing center" [GO:0051418]

Reported by: cmungall

Original Ticket: "geneontology/ontology-requests/4939":https://sourceforge.net/p/geneontology/ontology-requests/4939

[gocentral]

• labels: --> Other term-related request
• milestone: --> TermGenie
• assigned_to: nobody --> gomidori

Original comment by: mah11

[gocentral]

Logged In: YES user_id=436423 Originator: NO

Added: "mitochondrial DNA repair" [GO:0043504] is_a "mitochondrial DNA metabolic process" [GO:0032042] "proteolysis within lysosome associated with antigen processing and presentation" [GO:0002500] is_a "vacuolar protein catabolic process" [GO:0007039] "carnitine shuttle" [GO:0006853] is_a "intracellular lipid transport" [GO:0032365] "lysosomal transport" [GO:0007041] is_a "vacuolar transport" [GO:0007034] (actually move down from is_a GO:0046907) "mitochondrial rRNA export from mitochondrion" [GO:0019090] is_a "mitochondrial transport" [GO:0006839] "microvillus biogenesis" [GO:0030033] is_a "cell projection biogenesis" [GO:0030031] "oral apparatus organization and biogenesis" [GO:0032122] is_a "cell projection organization and biogenesis" [GO:0030030] (actually move from is_a GO:0006996) "contractile vacuole organization and biogenesis" [GO:0033298] is_a "vacuole organization and biogenesis" [GO:0007033] (actually move from is_a GO:0006996) "Golgi to plasma membrane protein transport" [GO:0043001] is_a "intracellular protein transport" [GO:0006886] "clathrin cage assembly" [GO:0048268] is_a "protein complex assembly" [GO:0006461] "pigment granule organization and biogenesis" [GO:0048753] is_a "vesicle organization and biogenesis" [GO:0016050] (actually move down from is_a GO:0006996) "microtubule nucleation by spindle pole body" [GO:0051417] is_a "microtubule nucleation by microtubule organizing center" [GO:0051418] (actually move down from is_a GO:0007020)

Not added: "cell-cell junction assembly and maintenance" [GO:0045216] is_a "cell-cell junction assembly" [GO:0007043] The existing relationship, GO:0007043 is_a GO:0045216, is correct; perhaps GO:0045216 should be "assembly OR maintenance" (logical "or", vernacular and/or). "nucleosome assembly" [GO:0006334] is_a "protein complex assembly" [GO:0006461] Moved nucleosome (GO:0000786 from is_a protein complex to is_a protein-DNA complex (GO:0032993), consistent with existing GO:0006334 is_a "protein-DNA complex assembly" (GO:0065004) "dosage compensation complex assembly" [GO:0042714] is_a "protein complex assembly" [GO:0006461] moved dosage compensation complex (GO:0046536) up to is_a macromolecular complex (GO:0032991) because some are protein-RNA complexes; added GO:0042714 is_a macromolecular complex assembly (GO:0065003)

Original comment by: mah11

[gocentral]

• status: open --> closed-fixed

Original comment by: mah11