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Source ontology files for the Gene Ontology
http://geneontology.org/page/download-ontology
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UM-BDD updates #4993

Closed gocentral closed 9 years ago

gocentral commented 16 years ago

UM-BBD has deleted some entries and added others. Adjust GO dbxrefs accordingly.

Obsolete those that have no references or other information beyond the deleted UM-BBD entry: 2-chloro-4,6-dihydroxy-1,3,5-triazine hydrolase activity ; GO:0018779 5-chloro-2-hydroxymuconic semialdehyde dehalogenase activity ; GO:0018704 limonene 8-monooxygenase activity ; GO:0018587

Reported by: mah11

Original Ticket: "geneontology/ontology-requests/5009":https://sourceforge.net/p/geneontology/ontology-requests/5009

gocentral commented 16 years ago

Logged In: YES user_id=436423 Originator: YES

most defunct UM-BBD enzyme xrefs removed; obsolete alert email sent for 3 terms

additions to do a few at a time; lower priority

Original comment by: mah11

gocentral commented 16 years ago

Original comment by: mah11

gocentral commented 16 years ago

Logged In: YES user_id=436423 Originator: YES

GO:0018587, GO:0018704, GO:0018779 obsolete

Original comment by: mah11

gocentral commented 16 years ago

Logged In: YES user_id=436423 Originator: YES

a few new dbxrefs and raft of new terms gets this as close to complete as is realistic

GO:0034778 2-hydroxy-4-isopropenylcyclohexane-1-carboxyl-CoA dehydrogenase activity GO:0034779 4-isopropenyl-2-ketocyclohexane-1-carboxyl-CoA hydrolase activity GO:0034780 glyphosate dehydrogenase activity GO:0034781 N-cyclohexylformamide amidohydrolase activity GO:0034782 dimethylmalonate decarboxylase activity GO:0034783 pivalate-CoA ligase activity GO:0034784 pivalyl-CoA mutase activity GO:0034785 salicylate 5-hydroxylase activity GO:0034786 9-fluorenone-3,4-dioxygenase activity GO:0034787 1-hydro-1,1a-dihydroxy-9-fluorenone dehydrogenase activity GO:0034788 2,3-dihydroxy-2'-carboxybiphenyl 1,2-dioxygenase activity GO:0034789 2-hydroxy-6-oxo-6-(2-carboxyphenyl)-hexa-2,4-dienoate hydrolase activity GO:0034790 3,4-dihydroxy-3,4-dihydrofluorene dehydrogenase activity GO:0034791 isobutylamine N-hydroxylase activity GO:0034792 hypophosphite dioxygenase activity GO:0034793 cyclopropanecarboxylate-CoA ligase activity GO:0034794 cyclopropanecarboxyl-CoA decyclase activity GO:0034795 butane monooxygenase activity GO:0034796 adipate-CoA ligase activity GO:0034797 fosfomycin 2-glutathione ligase activity GO:0034798 fosfomycin 2-L-cysteine ligase activity GO:0034799 dihydride TNP tautomerase activity GO:0034800 TNP dihydride denitratase activity GO:0034801 2,4-dinitrocyclohexanone hydrolase activity GO:0034802 branched-chain dodecylbenzene sulfonate monooxygenase activity GO:0034803 3-hydroxy-2-naphthoate 2,3-dioxygenase activity GO:0034804 benzo(a)pyrene 11,12-epoxidase activity GO:0034805 benzo(a)pyrene-trans-11,12-dihydrodiol dehydrogenase activity GO:0034806 benzo(a)pyrene 11,12-dioxygenase activity GO:0034807 4,5-dihydroxybenzo(a)pyrene methyltransferase activity GO:0034808 benzo(a)pyrene 4,5-dioxygenase activity GO:0034809 benzo(a)pyrene-cis-4,5-dihydrodiol dehydrogenase activity GO:0034810 4,5-dihydroxybenzo(a)pyrene dioxygenase activity GO:0034811 benzo(a)pyrene 9,10-dioxygenase activity GO:0034812 9,10-dihydroxybenzo(a)pyrene dioxygenase activity GO:0034813 benzo(a)pyrene 7,8-dioxygenase activity GO:0034814 7,8-dihydroxy benzo(a)pyrene dioxygenase activity GO:0034815 cis-4-(8-hydroxypyren-7-yl)-2-oxobut-3-enoate lyase activity GO:0034816 anthracene 9,10-dioxygenase activity GO:0034817 cis-9,10-dihydroanthracene-9,10-diol dehydrogenase activity GO:0034818 ADD 9alpha-hydroxylase activity GO:0034819 3-HSA hydroxylase activity GO:0034820 4,9-DSHA hydrolase activity GO:0034821 citronellol dehydrogenase activity GO:0034822 citronellal dehydrogenase activity GO:0034823 citronellyl-CoA ligase activity GO:0034824 citronellyl-CoA dehydrogenase activity GO:0034825 tetralin ring-hydroxylating dioxygenase activity GO:0034826 1,2-dihydroxy-1,2,5,6,7,8-hexyhadronaphthalene dehydrogenase activity GO:0034827 1,2-dihydroxy-5,6,7,8-tetrahydronaphthalene extradiol dioxygenase activity GO:0034828 4-(2-oxocyclohexyl)-2-hydroxy-buta-2,4-dienoate hydrolase activity GO:0034829 2-hydroxydec-2,4-diene-1,10-dioate hydratase activity GO:0034830 (2Z)-2,4-dihydroxydec-2-enedioate aldolase activity GO:0034831 (R)-(-)-1,2,3,4-tetrahydronaphthol dehydrogenase activity GO:0034832 geranial dehydrogenase activity GO:0034833 geranylate CoA-transferase activity GO:0034834 2-mercaptobenzothiazole dioxygenase activity GO:0034835 2-mercaptobenzothiazole monooxygenase activity GO:0034836 6-hydroxy-2-mercaptobenzothiazole monooxygenase activity GO:0034837 2-mercaptobenzothiazole-cis-6,7-dihydrodiol dehydrogenase activity GO:0034838 menthone dehydrogenase activity GO:0034839 menth-2-enone hydratase activity GO:0034840 3-hydroxymenthone dehydrogenase activity GO:0034841 mentha-1,3-dione-CoA ligase activity GO:0034842 thiophene-2-carboxylate-CoA ligase activity GO:0034843 2-oxoglutaryl-CoA thioesterase activity GO:0034844 naphthyl-2-methyl-succinate CoA-transferase activity GO:0034845 naphthyl-2-methyl-succinyl-CoA dehydrogenase activity GO:0034846 naphthyl-2-methylene-succinyl-CoA lyase activity GO:0034847 naphthyl-2-hydroxymethyl-succinyl-CoA dehydrogenase activity GO:0034848 naphthyl-2-oxomethyl-succinyl-CoA succinyl transferase activity GO:0034849 2-naphthoate CoA-transferase activity GO:0034850 isooctane monooxygenase activity GO:0034851 2,4,4-trimethyl-3-oxopentanoyl-CoA 2-C-propanoyl transferase activity GO:0034852 4,4-dimethyl-3-oxopentanal dehydrogenase activity GO:0034853 2,4,4-trimethyl-3-oxopentanoate decarboxylase activity GO:0034854 4,4-dimethyl-3-oxopentanoate decarboxylase activity GO:0034855 4-AD 9alpha-hydroxylase activity GO:0034856 2-hydroxyhexa-2,4-dienoate hydratase activity GO:0034857 2-(methylthio)benzothiazole monooxygenase activity GO:0034858 2-hydroxybenzothiazole monooxygenase activity GO:0034859 benzothiazole monooxygenase activity GO:0034860 2-mercaptobenzothiazole desulfurase activity GO:0034861 benzothiazole-2-sulfonate hydrolase activity GO:0034862 2,6-dihydroxybenzothiazole monooxygenase activity GO:0034863 2,4,4-trimethyl-1-pentanol dehydrogenase activity GO:0034864 2,4,4-trimethylpentanal dehydrogenase activity GO:0034865 2,4,4-trimethylpentanoate-CoA ligase activity GO:0034866 2,4,4-trimethylpentanoyl-CoA dehydrogenase activity GO:0034867 2,4,4-trimethylpent-2-enoyl-CoA hydratase activity GO:0034868 2,4,4-trimethyl-3-hydroxypentanoyl-CoA dehydrogenase activity GO:0034869 2,4,4-trimethyl-3-oxopentanoyl-CoA thioesterase activity GO:0034870 pinacolone 5-monooxygenase activity GO:0034871 1-hydroxy-4,4-dimethylpentan-3-one dehydrogenase activity GO:0034872 trans-geranyl-CoA isomerase activity GO:0034873 thioacetamide S-oxygenase activity GO:0034874 thioacetamide S-oxide S-oxygenase activity GO:0034875 caffeine oxidase activity GO:0034876 isonicotinic acid hydrazide hydrolase activity GO:0034877 isonicotinate dehydrogenase activity GO:0034878 2-hydroxyisonicotinate dehydrogenase activity GO:0034879 2,3,6-trihydroxyisonicotinate decarboxylase activity GO:0034880 citrazinate dehydrogenase activity GO:0034881 citrazinate hydrolase activity GO:0034882 cis-aconitamide amidase activity GO:0034883 isonicotinate reductase activity GO:0034884 gamma-N-formylaminovinylacetaldehyde dehydrogenase activity GO:0034885 gamma-N-formylaminovinylacetate hydrolase activity GO:0034886 gamma-aminovinylacetate deaminase activity GO:0034887 1,4-dihydroisonicotinate 2,3-dioxygenase activity GO:0034888 endosulfan monooxygenase I activity GO:0034889 endosulfan hemisulfate sulfatase activity GO:0034890 endosulfan diol hydrolyase (cyclizing) activity GO:0034891 endosulfan diol dehydrogenase activity GO:0034892 endosulfan lactone lactonase activity GO:0034893 N-nitrodimethylamine hydroxylase activity GO:0034894 4-hydroxypyridine-3-hydroxylase activity GO:0034895 pyridine-3,4-diol dioxygenase activity GO:0034896 3-formiminopyruvate hydrolase activity GO:0034897 4-(1-ethyl-1,4-dimethyl-pentyl)phenol monoxygenase activity GO:0034898 hexadecyltrimethylammonium chloride monooxygenase activity GO:0034899 trimethylamine monooxygenase activity GO:0034900 3-(N-formyl)-formiminopyruvate hydrolase activity GO:0034901 endosulfan hydroxyether dehydrogenase activity GO:0034902 endosulfan sulfate hydrolase activity GO:0034903 endosulfan ether monooxygenase activity GO:0034904 5-chloro-2-oxopent-4-enoate hydratase activity GO:0034905 5-chloro-4-hydroxy-2-oxopentanate aldolase activity GO:0034906 N-isopropylaniline 1,2-dixoxygenase activity GO:0034907 acetanilide 1,2-dioxygenase activity GO:0034908 2-chloro-N-isopropylacetanilide 1,2-dioxygenase activity GO:0034909 6-hydroxypseudooxynicotine dehydrogenase activity GO:0034910 6-hydroxy-3-succinoylpyridine hydrolase activity GO:0034911 phthalate 3,4-dioxygenase activity GO:0034912 phthalate 3,4-cis-dihydrodiol dehydrogenase activity GO:0034913 3,4-dihydroxyphthalate 2-decarboxylase activity GO:0034914 TNP hydride denitratase activity GO:0034915 2-methylhexanoyl-CoA C-acetyltransferase activity GO:0034916 2-methylhexanoyl-CoA dehydrogenase activity GO:0034917 2-methylhex-2-enoyl-CoA hydratase activity GO:0034918 3-hydroxy-2-methylhexanoyl-CoA dehydrogenase activity GO:0034919 butyryl-CoA 2-C-propionyltransferase activity GO:0034920 pyrene dioxygenase activity GO:0034921 cis-4,5-dihydroxy-4,5-dihydropyrene dehydrogenase activity GO:0034922 4,5-dihydroxypyrene dioxygenase activity GO:0034923 phenanthrene-4,5-dicarboxylate decarboxylase activity GO:0034924 cis-3,4-phenanthrenedihydrodiol-4-carboxylate dehydrogenase activity GO:0034925 pyrene 4,5-monooxygenase activity GO:0034926 pyrene-4,5-epoxide hydrolase activity GO:0034927 pyrene 1,2-monooxygenase activity GO:0034928 1-hydroxypyrene 6,7-monooxygenase activity GO:0034929 1-hydroxypyrene 7,8-monooxygenase activity GO:0034930 1-hydroxypyrene sulfotransferase activity GO:0034931 1-hydroxypyrene methyltransferase activity GO:0034932 1-methoxypyrene 6,7-monooxygenase activity GO:0034933 1-hydroxy-6-methoxypyrene methyltransferase activity GO:0034934 phenanthrene-4-carboxylate dioxygenase activity GO:0034935 tetrachlorobenzene dioxygenase activity GO:0034936 4,6-dichloro-3-methylcatechol 1,2-dioxygenase activity GO:0034937 perchlorate reductase activity GO:0034938 pyrrole-2-carboxylate monooxygenase activity GO:0034939 5-hydroxypyrrole-2-carboxylate tautomerase activity GO:0034940 5-oxo-4,5-dihydropyrrole-2-carboxylate amidase activity GO:0034941 pyrrole-2-carboxylate decarboxylase activity GO:0034942 cis-2-methyl-5-isopropylhexa-2,5-dienoate-CoA ligase activity GO:0034943 trans-2-methyl-5-isopropylhexa-2,5-dienoate-CoA ligase activity GO:0034944 3-hydroxy-2,6-dimethyl-5-methylene-heptanoyl-CoA dehydrogenase activity GO:0034945 2,6-dimethyl-5-methylene-3-oxo-heptanoyl-CoA C-acetyltransferase activity GO:0034946 3-isopropylbut-3-enoyl-CoA thioesterase activity GO:0034947 terephthalate decarboxylase activity GO:0034948 2,6-dihydroxypseudooxynicotine hydrolase activity GO:0034949 1,1-dichloroethane reductive dehalogenase activity GO:0034950 phenylboronic acid monooxygenase activity GO:0034951 o-hydroxylaminobenzoate mutase activity GO:0034952 malonate semialdehyde decarboxylase activity GO:0034953 perillyl-CoA hydratase activity GO:0034954 diphenyl ether 2,3-dioxygenase activity GO:0034955 2,3-dihydroxydiphenyl ether dioxygenase activity GO:0034956 diphenyl ether 1,2-dioxygenase activity GO:0034957 3-nitrophenol nitroreductase activity GO:0034958 aminohydroquinone hydrolase activity

Original comment by: mah11

gocentral commented 16 years ago

Original comment by: mah11