phosphoenolpyruvate carboxykinases

[gocentral]

Email from Becky Foulger:

At the moment the tree is:

% kinase % phosphoenolpyruvate carboxykinase ; GO:0004611 ; EC:4.1.1.- % phosphoenolpyruvate carboxykinase (ATP) ; GO:0004612 ; EC:4.1.1.49 % phosphoenolpyruvate carboxylase ; GO:0008964 ; EC:4.1.1.31 % phosphoenolpyruvate carboxylase (GTP) ; GO:0004613 ; EC:4.1.1.32

% lyase % carbon-carbon lyase % carboxy-lyase % phosphoenolpyruvate carboxykinase % phosphoenolpyruvate carboxykinase (ATP) ; GO:0004612 ; EC:4.1.1.49 % phosphoenolpyruvate carboxylase ; GO:0008964 ; EC:4.1.1.31 % phosphoenolpyruvate carboxylase (GTP) ; GO:0004613 ; EC:4.1.1.32

It's not atall in my field, but I came across it in my work and have 2 queries:

1. Could we change phosphoenol pyruvate carboxylase (GTP) ; GO:0004613 ; EC:4.1.1.32 to phosphoenolpyruvate carboxykinase (GTP), for consistency and move phosphoenolpyruvate carboxylase (GTP) to a synonym.

(see http://www.chem.qmul.ac.uk/iubmb/enzyme/EC4/1/1/32.html and also pg 501, Ox dictionary of Biochem and Mol. Biol.

also

2. maybe we should have a new term to make this branch complete, for future use: phosphoenolpyruvate carboxykinase (diphosphate) EC: 4.1.1.38 (see http://www.chem.qmul.ac.uk/iubmb/enzyme/EC4/1/1/38.html)

Thanks Becky

Reported by: mah11

Original Ticket: "geneontology/ontology-requests/57":https://sourceforge.net/p/geneontology/ontology-requests/57

[gocentral]

Logged In: YES user_id=436423

1. Done.

2. Done; the new term is GO:0030585.

midori

Original comment by: mah11

[gocentral]

• status: open --> closed

Original comment by: mah11

[gocentral]

• milestone: --> 192944
• status: closed --> closed-accepted

Original comment by: mah11

[gocentral]

• milestone: 192944 --> TermGenie

Original comment by: mah11