geneontology / go-ontology

Source ontology files for the Gene Ontology
http://geneontology.org/page/download-ontology
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forespore compartment #596

Closed gocentral closed 9 years ago

gocentral commented 21 years ago

Could we have the new term: "forespore compartment" ? for the location of Glucose 1-dehydrogenase (EC-Number 1.1.1.47 )

Reference: J Bacteriol 1977 Oct;132(1):282-93 Location and properties of glucose dehydrogenase in sporulating cells and spores of Bacillus subtilis. Fujita Y, Ramaley R, Freese E. Abstract: Late during sporulation, Bacillus subtilis produces glucose dehydrogenase (GlcDH; EC 1.1.1.47), which can react with D-glucose or 2-deoxy-D-glucose and can use nicotinamide adenine dinucleotide (NAD) or nicotinamide adenine dinucleotide phosphate (NADP) as a cofactor. This enzyme is found mainly in the forespore compartment and is present in spores; it is probably made exclusively in the forespore.... PMID: 21162 [PubMed - indexed for MEDLINE]21162 [PubMed

Definition: Bacillus subtilis is a soil bacterium that undergoes cellular differentiation when starved. During differentiation, the cell is partitioned into two compartments, the mother-cell and the forespore, ....

Reported by: brendamg

Original Ticket: "geneontology/ontology-requests/596":https://sourceforge.net/p/geneontology/ontology-requests/596

gocentral commented 21 years ago

Logged In: YES user_id=451873

I think for this I'll create a term 'forespore compartment' or just 'forespore' as part_of cell and define it:

Portion of the cell formed during the process of bacterial sporulation that will ultimately become the core of the endospore. An endospore is a type of dormant cell that is resistant to adverse conditions.

Don't think we need a term for 'endospore' because this is a type of cell, and GO doesn't include different cell types.

Original comment by: jl242

gocentral commented 21 years ago

Original comment by: jl242

gocentral commented 21 years ago

Logged In: YES user_id=451873

Added 'forespore compartment ; GO:0042601' as a part_of 'cell' with definition below.

Original comment by: jl242

gocentral commented 21 years ago

Original comment by: jl242

gocentral commented 21 years ago

Logged In: YES user_id=451873

Added 'forespore compartment ; GO:0042601' as a part_of 'cell' with definition below.

Original comment by: jl242

gocentral commented 21 years ago

Original comment by: jl242