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geneontology / go-ontology

Source ontology files for the Gene Ontology
http://geneontology.org/page/download-ontology
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new regulation terms #6355

Closed gocentral closed 9 years ago

gocentral commented 15 years ago

regulation of... cellular morphogeensis during vegetative growth trehalose metabolic process amino acid transport microtubule nucleation (also positive regulation and activation) RNA interference, production of siRNA fungal type cell wall 1,3 beta glucan biosynthetic process

Val

Reported by: ValWood

Original Ticket: geneontology/ontology-requests/6374

gocentral commented 15 years ago

Original comment by: mah11

gocentral commented 15 years ago

and positive regulation of meiosis I (note to self spo5)

Original comment by: ValWood

gocentral commented 15 years ago

also regulation of protein folding in the ER (hut1) protein deneddylation (csn1) induction of conjugation upon nitrogen starvation (pka1) -ve regulation of chromatin silencing by snall RNA (eri1)

Original comment by: ValWood

gocentral commented 15 years ago

Added:

regulation of cellular morphogenesis during vegetative growth ; GO;0090061 regulation of trehalose metabolic process ; GO:0090062 positive regulation of microtubule nucleation ; GO:0090063 activation of microtubule nucleation ; GO:0090064 regulation of RNA interference, production of siRNA ; GO:0090065

These terms exist:

regulation of amino acid transport ; GO:0051955 but we need to do a bunch of clean-up in this part of the graph with respect to the trans-membrane aspect.

regulation of microtubule nucleation ; GO:0010968

regulation of fungal-type cell wall 1,3 beta glucan biosynthetic process ; GO:0070610 but we added a synonym

Val,

We aren't going to close this til we take care of the transport stuff (after vacation), but if you need more terms, open a new SF item otherwise we might miss them.

D&T

Original comment by: ukemi

gocentral commented 15 years ago

Added:

GO:0060903, positive regulation of meiosis I GO:0060904, regulation of protein folding in the endoplasmic regulation GO:0060905, regulation of induction of conjugation upon nitrogen starvation GO:0060906, negative regulation of chromatin silencing by small RNA

Exists:

GO:0060625, regulation of protein deneddylation

Original comment by: tberardini

gocentral commented 15 years ago

Are we all done here? I didn't notice that I was missing in my log files but if you want ot cloe this and I'll open a new one if I still need anything.

val

Original comment by: ValWood

gocentral commented 15 years ago

All the terms that you requested have been added but we still need to sort out the "regulation of amino acid transport" part of the graph with respect to the trans-membrane aspect.

Original comment by: tberardini

gocentral commented 15 years ago

created:

GO:0003333, amino acid transmembrane transport

sorted out linkage of amino acid transport and transmembrane transport and the regulation kids, and the functions that link to them

Original comment by: tberardini

gocentral commented 15 years ago

Original comment by: tberardini

gocentral commented 13 years ago

Original comment by: mah11