geneontology / go-ontology

Source ontology files for the Gene Ontology
http://geneontology.org/page/download-ontology
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More new cc terms from NIFSTD - other #6623

Closed gocentral closed 9 years ago

gocentral commented 15 years ago

Here's the list of terms - full file attached:

Climbing fiber Astrocyte Sheath Cerebellar mossy fiber C-fiber Triad Perforant path Regional Part Of Pyramidal cell axon Schaffer collateral Motor endplate Schwann Cell Paranodal Termination Schwann Cell Compact Myelin Branch Point Of Dendrite Node Of Ranvier Axon Neuron Protrusion Junction Complex Regional Part Of Neuron Process Schwann Cell Myelin Sheath Regional Part Of SER Pyramidal Neuronal Cell Body Mushroom Dendritic Spine Branched Dendritic Spine Neuronal Cell Body Tyrosine Kinase Receptor Regional Part Of Neuronal Cell Body Trunk Basilar Dendrite Regional Part Of Nucleolus Spine Vellous Process Juxta Paranode Axon Lumenal Surface Pars Granulosa Thin Dendritic Spine Endoplasmic Reticulum Exit Site Glial Subcompartment Sub-surface Cisternae Electrotonic Synapse Tuft Amyloid Fibril Oligodendrocyte Paranodal Termination Ensheathing Process Axon Collateral Peripheral Astrocyte Process Dendritic Growth Cone Hypolemmal Cisternae Calyx Of Held Orthogonal Array Pars Fibrosa Ribbon Synapse Axon Terminal Axonal Growth Cone Somatic Spine Perivascular Endfoot Vascular Endfoot Membrane Stack Mesaxon Spine Mat Apical Dendrite Chemical Synapse Dendriole Stubby Dendritic Spine Endfoot Glomerulus Gap Junction Plaque Dendritic Branch Paranode Axon Spiny Bracelet Of Nageotte

Reported by: jl242

Original Ticket: geneontology/ontology-requests/6643

gocentral commented 15 years ago

Original comment by: jl242

gocentral commented 14 years ago

Added:

dendriole ; GO:0044293 dendritic growth cone ; GO:0044294 axonal growth cone ; GO:0044295 dendritic tuft ; GO:0044296

Original comment by: jl242

gocentral commented 14 years ago

Added:

cell body ; GO:0044297 cell body membrane ; GO:0044298 C-fiber ; GO:0044299 cerebellar mossy fiber ; GO:0044300 climbing fiber ; GO:0044301 dentate gyrus mossy fiber ; GO:0044302 axon collateral ; GO:0044303 main axon ; GO:0044304 calyx of Held ; GO:0044305 terminal specialization ; GO:0044306 dendritic branch ; GO:0044307 axonal spine ; GO:0044308 neuron spine ; GO:0044309

Original comment by: jl242

gocentral commented 14 years ago

erm, 'cell body' is an exact synonym of 'cell soma' ...

[Term] id: GO:0043025 name: cell soma namespace: cellular_component def: "The portion of a cell bearing surface projections such as axons, dendrites, cilia, or flagella that includes the nucleus, but excludes all cell projections." [GOC:go_curators] comment: Note that 'cell body' and 'cell soma' are not used in the literature for cells that lack projections, nor for some cells (e.g. yeast with mating projections) that do have projections. subset: goslimpir synonym: "cell body" EXACT [] xref: Wikipedia:Soma(biology) is_a: GO:0044464 ! cell part

Term] id: GO:0032809 name: cell soma membrane namespace: cellular_component def: "The plasma membrane of a cell that bears surface projections such as axons, dendrites, cilia, or flagella, excluding the plasma membrane on cell projections." [GOC:ecd] synonym: "cell body membrane" EXACT [] is_a: GO:0044459 ! plasma membrane part relationship: part_of GO:0043025 ! cell soma

Original comment by: mah11

gocentral commented 14 years ago

I know - it's okay - I had to rejig a load of terms - the old cell soma is now called 'neuronal cell body' and this is a new term.

Original comment by: jl242

gocentral commented 13 years ago

Original comment by: paolaroncaglia

gocentral commented 13 years ago

Original comment by: paolaroncaglia

gocentral commented 13 years ago

Note to self: create new grouping term "neuron part".

Original comment by: paolaroncaglia

gocentral commented 12 years ago

Original comment by: paolaroncaglia

gocentral commented 12 years ago

Original comment by: paolaroncaglia

gocentral commented 12 years ago

Superceded by https://sourceforge.net/tracker/?func=detail&aid=3572378&group\_id=36855&atid=440764 (Integration of SAO terms into GO CC)

Original comment by: paolaroncaglia

gocentral commented 12 years ago

Original comment by: paolaroncaglia