UDP-glucuronate decarboxylation

[gocentral]

Hi,

I have just posted a request for a new function term (UDP-glucuronate decarboxylase), and alongside with it, goes a request for a new process term:

Name: UDP-glucuronate decarboxylation Type: process Definition: Removal of carboxyl group from UDP- glucuronate, resulting in UDP-xylose. synonyms: UDP-xylose biosynthesis

References: (these are the same as for the related function term, UDP-glucuronate decarboxylase)

The relative enzymatic activity is deposited in ENZYME: http://us.expasy.org/cgi-bin/nicezyme.pl?4.1.1.35

The relative biochemical pathway is shown in http://us.expasy.org/cgi-bin/show\_image?B3

The publication describing the first characterization of UDP-glucuronic acid decarboxylase is PMID:11593010 http://www.ncbi.nlm.nih.gov/entrez/query.fcgi? cmd=Retrieve&db=PubMed&list_uids=11593010&dopt= Abstract

Place in the graph:

$Gene_Ontology ; GO:0003673 <biological_process ; GO:0008150 %cell growth and/or maintenance ; GO:0008151 ; %metabolism ; GO:0008152 ; %organic acid metabolism ; GO:0006082 ; %carboxylic acid metabolism ; GO:0019752 ; %uronic acid metabolism ; GO:0006063 ; %glucuronate metabolism ; GO:0019585 %glucuronate biosynthesis ; GO:0046399 %glucuronate catabolism ; GO:0006064 ; %UDP-glucuronate metabolism ; GO:0046398 %UDP-glucuronate biosynthesis ; GO:0006065 %UDP-glucuronate decarboxylation (NEW)

Please let me know if you have any comments. Thanks very much!

Paola Roncaglia

Reported by: paolar

Original Ticket: "geneontology/ontology-requests/688":https://sourceforge.net/p/geneontology/ontology-requests/688

[gocentral]

• assigned_to: nobody --> gomidori

Original comment by: girlwithglasses

[gocentral]

• assigned_to: gomidori --> jenclark

Original comment by: jl242

[gocentral]

Logged In: YES user_id=473796

We shouldn't need to add this term because the reaction is covered by a function term.

Original comment by: girlwithglasses

[gocentral]

• assigned_to: jenclark --> girlwithglasses

Original comment by: girlwithglasses

[gocentral]

Logged In: YES user_id=723278

Thanks -- I saw the corresponding function term has just been implemented, so I believe you may get rid of this process term request. Thanks for your help! Paola

Original comment by: paolar

[gocentral]

• milestone: --> TermGenie
• status: open --> closed-duplicate

Original comment by: girlwithglasses