TAIR process terms

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Please find the attached file for details.

Reported by: smundodi

Original Ticket: "geneontology/ontology-requests/722":https://sourceforge.net/p/geneontology/ontology-requests/722

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Original comment by: smundodi

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Quick comment:

7. amylopectin biosynthesis PART OF starch biosynthesis GO: 0019252 Def: The formation from simpler components of amylopectin, the (1-> 4) linked alpha glucose units with (1-6) alpha linkages Ref:tair: ISBN:0943088399

Could this go under "glucan biosynthesis" as an IS-A child rather than as part of starch biosynthesis?

From ISBN:0198506732 amylopectin - a polydisperse highly branched glucan composed of D- glucopyranose residues in alpha(1->4) glycosidic linkage; the chains are joined by alpha(1->6) glycosidic linkages and a small number of other linkages may occur.

Original comment by: girlwithglasses

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Although it doesn't say much in the definition, amylopetcin is known to be a component of starch.So it makes sense to add this as 'part of' starch biosynthesis.

Original comment by: smundodi

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I thinkk something has gone wrong in the definitions for GO:0010017 and GO:0010018 in the ontology - they read:

term: red/far red light signaling pathway goid: GO:0010017 definition: The process by which the molecular signal produced by phototransduction is translated into cellular process.

term: far red light signaling pathway goid: GO:0010018 definition: The process by which far red light is converted to a cellular process.

They don't make much sense to me! Can you explain / reword?

Original comment by: girlwithglasses

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Amelia,

I will fix the definitions when I am adding some new terms on DAG, which I hope is sometime this week or early next week.. Is that ok?

Suparna

Original comment by: smundodi

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Terms added:

GO:0010014 SM meristem initiation GO:0010015 SM root morphogenesis GO:0010016 SM shoot morphogenesis GO:0010017 SM red/far red light signaling pathway GO:0010018 SM far red light signaling pathway GO:0010019 SM chloroplast-nucleus signaling pathway GO:0010020 SM chloroplast division GO:0010021 SM amylopectin biosynthesis GO:0010022 SM meristem determinancy GO:0010023 SM proanthocyanidin biosynthesis GO:0010024 SM phytochromobilin biosynthesis GO:0010025 SM wax biosynthesis GO:0010026 SM trichome differentiation GO:0010027 SM thylakoid membrane organization and biogenesis GO:0010028 SM xanthophyll cycle GO:0010029 SM regulation of seed germination GO:0010030 SM positive regulation of seed germination GO:0010031 SM circumnutation

Original comment by: girlwithglasses

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• status: open --> closed-accepted

Original comment by: girlwithglasses