See https://github.com/orgs/geneontology/projects/104 - Alex: the issue is that redundant annotations (gene + GO terms) are removed if they come from PINC or GDB Note that all IEAs are also filtered if there is any other non--IEA annotation Discussion: was annotated to (probably) integral to plasma membrane; the term was merged into plasma membrane, therefore the annotation is considered 'redundant' and filtered. Note that IEAs, as well as PINC and GDB annotations are filtered out if there are other manual annotations to the same gene + GO term (or a child). AI Pascale: ask GO PIs and managers if we should filter out these annotations, then Sandra if she wants to filter out these 'redundant' sources
pgaudet
commented
1 month ago
See https://github.com/orgs/geneontology/projects/104 - Alex: the issue is that redundant annotations (gene + GO terms) are removed if they come from PINC or GDB Note that all IEAs are also filtered if there is any other non--IEA annotation Discussion: was annotated to (probably) integral to plasma membrane; the term was merged into plasma membrane, therefore the annotation is considered 'redundant' and filtered. Note that IEAs, as well as PINC and GDB annotations are filtered out if there are other manual annotations to the same gene + GO term (or a child). AI Pascale: ask GO PIs and managers if we should filter out these annotations, then Sandra if she wants to filter out these 'redundant' sources