search

geneontology / go-releases

Tasks and notes for monthly GO releases
0 stars 0 forks source link

SynGO new data load #66

Closed pgaudet closed 5 months ago

pgaudet commented 8 months ago

Email by Frank Koopmans, Dec 1, 2023

Hi, It's been a while since the last SynGO update but today we've finished our work on update v1.2; I've uploaded the dataset to GitHub as per usual. (last time we sent data your way was to address some minor issues/fixes that Pascale requested in July 2022) This is just a friendly headsup from my end, I'm not sure whether this has to be followed up on GO's end or whether data integrations proceed smoothly. If you encounter any issues with the new dataset, please let me know!

data uploaded here: https://github.com/geneontology/syngo2lego_data_conversion travis link: https://travis-ci.org/github/geneontology/syngo2lego_data_conversion

The travis thing doesn't seem to work anymore (for me), so I cannot see whether parsing of the JSON went well. The error message I see on the travis link; "We are unable to start your build at this time. You exceeded the number of users allowed for your plan. Please review your plan details and follow the steps to resolution."

Best, Frank

pgaudet commented 8 months ago

Emailed @dustine32 and @kltm to follow up on this

kltm commented 6 months ago

@dustine32 This completed at your end in the last noctua update, right?

kltm commented 6 months ago

@dustine32 Ah, here: https://github.com/geneontology/noctua/issues/866 https://github.com/geneontology/noctua-models/pull/272

dustine32 commented 6 months ago

@kltm Yep, the models went into Noctua during the 2024-03-14 outage. I'm also supposed to notify Frank once these annotations are in a new GO release.

pgaudet commented 5 months ago

From: Dustin Ebert [debert@usc.edu](mailto:debert@usc.edu) Sent: Monday, April 15, 2024 10:57 PM To: Koopmans, F.T.W. (Frank) [frank.koopmans@vu.nl](mailto:frank.koopmans@vu.nl); Pascale Gaudet [Pascale.Gaudet@sib.swiss](mailto:Pascale.Gaudet@sib.swiss) Subject: Re: SynGO release 1.2 uploaded to syngo2lego_data_conversion GitHub repo

Hi Frank,

Just letting you know that the latest SynGO data, after converting to GO-CAM, has been integrated into GO release 2024-03-28.

Thanks!

-Dustin

This is great, thanks for the heads-up !

Best, Frank

pgaudet commented 5 months ago

SynGO | 1458 / 11205 | 13.01% in 2024-03-28 snapshot