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geneontology / go-shapes

Schema for Gene Ontology Causal Activity Models defined using RDF Shapes
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Update java #143

Closed goodb closed 5 years ago

goodb commented 5 years ago

This fixes previous errors with the java implementation. Runs appropriately on current shex, shapemap, and test ttl files. (note that the test ttl files need to be enhanced with the missing sublass axioms - for example using the scala script).

goodb commented 5 years ago

I'd like to go ahead and merge this. It seems the build error is related to problems downloading a dependency, not with any code problem.

Failed to resolve ivy dependencies:Error downloading org.slf4j:slf4j-api:1.7.26 717 not found: /home/travis/.ivy2/local/org.slf4j/slf4j-api/1.7.26/ivys/ivy.xml 718 download error: Caught java.io.IOException: Server returned HTTP response code: 403 for URL:

https://repo1.maven.org/maven2/org/slf4j/slf4j-api/1.7.26/slf4j-api-1.7.26.pom (Server returned HTTP response code: 403 for URL: https://repo1.maven.org/maven2/org/slf4j/slf4j-api/1.7.26/slf4j-api-1.7.26.pom) while downloading https://repo1.maven.org/maven2/org/slf4j/slf4j-api/1.7.26/slf4j-api-1.7.26.pom 719make: *** [target/should_pass/Test000-Correct_and_complete_ActivityUnit_model-enriched.ttl] Error 1 720The command "(cd scala && make test)" exited with 2.

balhoff commented 5 years ago

It seems the build error is related to problems downloading a dependency, not with any code problem

In this case I usually hit the "Restart build" button at Travis. I have been running into tons of these network problems with Travis lately.

goodb commented 5 years ago

Restart on travis cleared the blockage. (Note that the restart button did not work from the github page. Had to go to the travis page to make it work).