geneontology / go-shapes

Schema for Gene Ontology Causal Activity Models defined using RDF Shapes
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add infobiomol to shapemap #246

Closed goodb closed 3 years ago

goodb commented 3 years ago

This adds InformationBiomacromolecule to the list of shapes that appear in the go-cam-shapes.shapeMap file. Why did we not do this before? I can't remember..

The functional consequence as the validation code currently running in Minerva is written is that this will allow for explanations of errors associated with individuals corresponding to genes and proteins in go-cams. For example, if some one asserted that a gene was a part of a biological process, this change will allow the explanation to come out that genes are not supposed to be part of biological processes. Without this change, models containing problems like that will still fail to validate, but the explanations won't come out.

lpalbou commented 3 years ago

For documentation, here was an example of that issue with a RXRa part of BP and the missing explanation for that error (no red square):

Screen Shot 2020-11-06 at 11 56 53 AM

Thanks Ben